☆61May 11, 2026Updated last month
Alternatives and similar repositories for EukDetect
Users that are interested in EukDetect are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Oct 14, 2023Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Population genomics from metagenomes☆13Sep 1, 2024Updated last year
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 5 months ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆92May 11, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆27Jun 20, 2023Updated 3 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated 3 weeks ago
- Tool to estimate genome quality of microbial eukaryotes☆44Aug 1, 2025Updated 10 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Apr 4, 2026Updated 2 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆91Dec 27, 2024Updated last year
- Microbiome classification pipeline☆67May 13, 2025Updated last year
- tiara – a tool for DNA sequence classification☆85Mar 2, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆108Jun 12, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆207Aug 25, 2025Updated 10 months ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Jun 10, 2026Updated 2 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆268Mar 20, 2025Updated last year
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆36Apr 15, 2026Updated 2 months ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated last year
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Pipeline for major biological analyses.☆35Mar 30, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- ☆24Dec 5, 2018Updated 7 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆81Jun 17, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆61Feb 7, 2026Updated 4 months ago
- ☆11Mar 11, 2025Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- DAS Tool☆174May 2, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆254May 13, 2026Updated last month
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago