RogerLab / Eukfinder
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
☆14Updated last week
Related projects ⓘ
Alternatives and complementary repositories for Eukfinder
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Prophage Activity Estimator☆26Updated 5 months ago
- ☆18Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆29Updated 2 years ago
- ☆23Updated last year
- KEGG Module Evaluation Tool☆26Updated 11 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆40Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆35Updated 2 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆18Updated last year
- ☆23Updated 8 months ago
- ☆35Updated this week
- A workflow and scripts for large-scale antiSMASH analyses☆30Updated this week
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 3 months ago
- lsaBGC - suite for pan-BGC-omics analysis☆18Updated 2 months ago
- Metabolic scanning and annotation of Metagenomes☆9Updated 3 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆37Updated 2 months ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 6 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆29Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆20Updated 3 weeks ago
- ☆30Updated 10 months ago
- viralFlye pipeline☆19Updated 2 months ago
- ☆18Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆46Updated 4 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆24Updated last week
- Microbial agile accurate SNP Typer☆29Updated 10 months ago
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆25Updated 2 years ago