RogerLab / Eukfinder
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
☆22Updated 2 weeks ago
Alternatives and similar repositories for Eukfinder:
Users that are interested in Eukfinder are comparing it to the libraries listed below
- A workflow and scripts for large-scale antiSMASH analyses☆40Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- ☆20Updated 3 years ago
- ☆16Updated 4 months ago
- Prophage Activity Estimator☆26Updated 11 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- ☆25Updated last year
- a python package for automated generation of phylogenetic trees from genbank files☆21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 6 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Bacterial GWAS analysis☆40Updated 3 weeks ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆30Updated last week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆43Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆11Updated last month
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 10 months ago
- ☆24Updated 6 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆34Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 3 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 6 months ago