RogerLab / EukfinderLinks
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
☆27Updated 4 months ago
Alternatives and similar repositories for Eukfinder
Users that are interested in Eukfinder are comparing it to the libraries listed below
Sorting:
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 4 months ago
- Prophage Activity Estimator☆26Updated last year
- ☆21Updated 3 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆51Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆38Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated 3 weeks ago
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆16Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- Identify and remove contaminants from metagenome-assembled genomes☆19Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Updated this week
- ☆16Updated 3 months ago
- ☆26Updated 2 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆22Updated 5 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 weeks ago
- ☆32Updated 6 months ago
- Hydrocarbon biodegradation gene annotation☆16Updated 3 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆46Updated 8 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆18Updated last week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- Population genomics from metagenomes☆12Updated 11 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated last year
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 11 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆47Updated 5 months ago
- ☆34Updated last year