RogerLab / EukfinderLinks
Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
☆28Updated 3 weeks ago
Alternatives and similar repositories for Eukfinder
Users that are interested in Eukfinder are comparing it to the libraries listed below
Sorting:
- Prophage Activity Estimator☆31Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 10 months ago
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- ☆22Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆46Updated this week
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆15Updated 4 years ago
- a python package for automated generation of phylogenetic trees from genbank files☆23Updated 2 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated last month
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated 3 weeks ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- ☆26Updated 2 years ago
- ☆34Updated 2 years ago
- ☆17Updated 8 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 9 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated 2 weeks ago
- ☆34Updated 4 months ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Updated 2 years ago
- Population genomics from metagenomes☆12Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆58Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- ☆38Updated 2 years ago
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year