Alternatives and similar repositories for RiboDetector

Users that are interested in RiboDetector are comparing it to the libraries listed below

• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• MikeAxtell / ShortStack
  ShortStack: Comprehensive annotation and quantification of small RNA genes
  ☆93Updated 2 months ago
• Trinotate / Trinotate.github.io
  web documentation for Trinotate
  ☆48Updated 2 years ago
• louiejtaylor / grabseqs
  A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
  ☆106Updated 5 years ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆151Updated last year
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆44Updated 3 years ago
• moiexpositoalonsolab / grenepipe
  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…
  ☆103Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆90Updated 2 weeks ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated 2 years ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆70Updated last week
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆41Updated 5 years ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆120Updated last year
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆125Updated last month
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆109Updated last year
• Trinotate / Trinotate
  Trinotate source code
  ☆82Updated last year
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆33Updated 2 years ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 4 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 5 months ago
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆87Updated last week
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆150Updated this week
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆99Updated last month
• mjsull / Easyfig
  Development version of Easyfig
  ☆99Updated last year
• epi2me-labs / wf-transcriptomes
  ☆99Updated last week
• ShiLab-Bioinformatics / subread
  The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…
  ☆45Updated 2 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆141Updated 2 weeks ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆98Updated last year
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆129Updated 3 months ago