hzi-bifo / RiboDetectorView external linksLinks
Accurate and rapid RiboRNA sequences Detector based on deep learning
☆119Feb 5, 2026Updated last week
Alternatives and similar repositories for RiboDetector
Users that are interested in RiboDetector are comparing it to the libraries listed below
Sorting:
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆287Aug 18, 2025Updated 5 months ago
- ☆20Dec 13, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆54Mar 17, 2020Updated 5 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 2 years ago
- A variable-selection oriented LASSO bagging algorithm for biomarker development in omic-based translational research☆19Jul 7, 2023Updated 2 years ago
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆79Nov 23, 2023Updated 2 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Feb 5, 2026Updated last week
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- ☆63Feb 27, 2024Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆124Aug 11, 2025Updated 6 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Sep 3, 2024Updated last year
- ☆56Jan 30, 2026Updated 2 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Jul 17, 2020Updated 5 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- ATLAS - Three commands to start analyzing your metagenome data☆402Nov 28, 2025Updated 2 months ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆10Sep 3, 2025Updated 5 months ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.☆30Feb 3, 2026Updated last week
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- High-quality Nanopore-only genome polisher☆69Aug 16, 2024Updated last year
- Long-reads Gap-free Chromosome-scale Assembler☆79Mar 21, 2023Updated 2 years ago
- ☆45Jun 27, 2023Updated 2 years ago
- Foreign Contamination Screening caller scripts and documentation☆157Mar 18, 2025Updated 10 months ago
- tiara – a tool for DNA sequence classification☆75Mar 2, 2024Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆606Updated this week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 7 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆209Aug 21, 2024Updated last year
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 weeks ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Aug 24, 2025Updated 5 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆154Jan 23, 2026Updated 3 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆28Jan 15, 2026Updated last month
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago