Alternatives and similar repositories for RiboDetector:

Users that are interested in RiboDetector are comparing it to the libraries listed below

• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• biobakery / kneaddata
  Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
  ☆116Updated 3 weeks ago
• karkman / MetagenomeCourse2019
  Course material for the metagenomics course
  ☆43Updated 3 years ago
• Sydney-Informatics-Hub / Shotgun-Metagenomics-Analysis
  Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more
  ☆27Updated last year
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆57Updated 11 months ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆65Updated last year
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆89Updated 3 years ago
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆52Updated 2 years ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆117Updated 2 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆115Updated 10 months ago
• linsalrob / fastq-pair
  Match up paired end fastq files quickly and efficiently.
  ☆144Updated 9 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆96Updated 11 months ago
• mjsull / Easyfig
  Development version of Easyfig
  ☆93Updated last year
• smdabdoub / kraken-biom
  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…
  ☆52Updated 2 years ago
• YongxinLiu / Liu2020ProteinCell
  Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome
  ☆40Updated 4 years ago
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆115Updated last year
• tderrien / FEELnc
  FEELnc : FlExible Extraction of LncRNA
  ☆85Updated 6 months ago
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆74Updated last week
• vappiah / bacterial-genomics-tutorial
  ☆49Updated last year
• nearinj / Comparison_of_DA_microbiome_methods
  ☆55Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆88Updated last week
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆96Updated last year
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆70Updated 3 weeks ago
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆61Updated 2 weeks ago
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆51Updated 5 months ago
• epi2me-labs / wf-basecalling
  ☆37Updated last week
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆111Updated last month
• tseemann / PEAR
  Pair-End AssembeR
  ☆31Updated 10 years ago
• epi2me-labs / wf-transcriptomes
  ☆88Updated 2 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆116Updated 4 years ago