hzi-bifo / RiboDetectorLinks
Accurate and rapid RiboRNA sequences Detector based on deep learning
☆115Updated last year
Alternatives and similar repositories for RiboDetector
Users that are interested in RiboDetector are comparing it to the libraries listed below
Sorting:
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Pipeline & Reproducible analysis examples for amplicon and metagenome in microbiome☆41Updated 5 years ago
- Course material for the metagenomics course☆44Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- ☆32Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆132Updated 2 weeks ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated 4 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆106Updated 3 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆138Updated last month
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated this week
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆152Updated last week
- ☆57Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆83Updated 3 months ago
- A catalogue of available long read sequencing data analysis tools☆79Updated 2 weeks ago
- Development version of Easyfig☆100Updated last year
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing (Lucas*, Pryszcz* et al., Nat Biotech 2023)☆16Updated last year
- Dfam Transposable Element Tools Docker container.☆100Updated 3 weeks ago
- Trinotate source code☆83Updated last year
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- List of genome assembly tools☆78Updated last week
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104Updated 4 months ago
- FEELnc : FlExible Extraction of LncRNA☆90Updated 2 months ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆118Updated 5 years ago