BigDataBiology / SemiBinLinks
SemiBin: metagenomics binning with self-supervised deep learning
☆143Updated 6 months ago
Alternatives and similar repositories for SemiBin
Users that are interested in SemiBin are comparing it to the libraries listed below
Sorting:
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆123Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆99Updated 6 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆141Updated last month
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆77Updated 9 months ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆70Updated 5 years ago
- Find endogenous viral elements in genomes☆16Updated 2 weeks ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and …☆32Updated last year
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆85Updated 5 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆76Updated last month
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆155Updated 5 months ago
- ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Dat…☆60Updated 6 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆190Updated 2 weeks ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 3 weeks ago
- A pipeline for nanopore long-read metagenomic analysis.☆47Updated 4 months ago
- ☆30Updated 7 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆229Updated 6 months ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- ☆61Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆71Updated 5 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆81Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆77Updated 2 years ago
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆143Updated last month
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆62Updated 3 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆98Updated 2 months ago