SemiBin: metagenomics binning with self-supervised deep learning
☆173Jul 20, 2026Updated this week
Alternatives and similar repositories for SemiBin
Users that are interested in SemiBin are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆79Mar 10, 2024Updated 2 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆271Mar 20, 2025Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆77Updated this week
- MAGScoT - a MAG scoring and refinement tool☆48Apr 8, 2026Updated 3 months ago
- Variational autoencoder for metagenomic binning☆330Apr 27, 2026Updated 2 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- DAS Tool☆177May 2, 2024Updated 2 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆110Updated this week
- An algorithm for clustering metagenomic sequences.☆43Dec 12, 2025Updated 7 months ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆259May 13, 2026Updated 2 months ago
- More scalable dereplication for metagenome assembled genomes☆87Updated this week
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆93May 11, 2026Updated 2 months ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- alignment-free coverage calculation for metagenomic binning >100 times faster☆54May 8, 2026Updated 2 months ago
- geNomad: Identification of mobile genetic elements☆325Mar 29, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Read alignment statistics for metagenomics☆401Jul 10, 2026Updated 2 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 6 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆314Feb 3, 2026Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆229Mar 24, 2026Updated 4 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆180Updated this week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆53Jul 10, 2026Updated 2 weeks ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Jun 1, 2026Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆474Jul 28, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆224May 9, 2026Updated 2 months ago
- Rapid comparison and dereplication of genomes☆349Jul 16, 2026Updated last week
- ☆63Jul 16, 2026Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆616May 20, 2026Updated 2 months ago
- ☆22Sep 19, 2025Updated 10 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 8 months ago
- ☆33Jul 16, 2023Updated 3 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆335Jun 3, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Binning Virus Genomes from Metagenomes☆75Jul 13, 2022Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆664Jul 10, 2026Updated 2 weeks ago
- Predict AMPs in (meta)genomes and peptides☆96Updated this week
- Virus Identification By iteRative ANnoTation☆199Apr 15, 2024Updated 2 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- ☆65Feb 27, 2024Updated 2 years ago
- MAG Circularization Method☆33Nov 4, 2025Updated 8 months ago