ZhaoXM-Lab / metaMICLinks
Assessing and Improving the quality of metagenomic assemblies
☆30Updated 3 years ago
Alternatives and similar repositories for metaMIC
Users that are interested in metaMIC are comparing it to the libraries listed below
Sorting:
- Discover and annotate the virome☆53Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- MAG Circularization Method☆32Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆30Updated 2 years ago
- Prophage Activity Estimator☆28Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- Bacterial GWAS analysis☆45Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated this week
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- Calculate assocations between genes and traits☆28Updated 7 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆31Updated last month
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated 2 weeks ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago