Assessing and Improving the quality of metagenomic assemblies
☆31Feb 21, 2022Updated 4 years ago
Alternatives and similar repositories for metaMIC
Users that are interested in metaMIC are comparing it to the libraries listed below
Sorting:
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last week
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 2 years ago
- ☆63Feb 27, 2024Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆181Updated this week
- MetaSNV, a metagenomic SNV calling pipeline.☆20Mar 25, 2022Updated 3 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- MAG Circularization Method☆32Nov 4, 2025Updated 3 months ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month
- Simple Python interface to CoverM's fast coverage estimation functions☆10Dec 20, 2024Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 5 months ago
- Improvement of metagenome-assembled genomes☆54Mar 17, 2020Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- ☆26Jun 20, 2023Updated 2 years ago
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆81Nov 23, 2023Updated 2 years ago
- This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)☆32Jan 19, 2026Updated last month
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆155Feb 19, 2026Updated last week
- Metagenomic Binning Algorithm☆51Jan 16, 2026Updated last month
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆34Updated this week
- finding conserved regions in highly diverse genomes☆16Jun 1, 2025Updated 9 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- ☆57Feb 18, 2026Updated last week
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆82Sep 8, 2025Updated 5 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆127Feb 8, 2026Updated 3 weeks ago
- Estimate metagenomic coverage and sequence diversity☆59Dec 18, 2025Updated 2 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆71Feb 5, 2026Updated 3 weeks ago
- ☆34Jul 16, 2023Updated 2 years ago
- 🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes☆81Dec 4, 2025Updated 2 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆251Mar 20, 2025Updated 11 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 8 months ago