Alternatives and similar repositories for metaMIC

Users that are interested in metaMIC are comparing it to the libraries listed below

• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆45Updated 3 weeks ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆22Updated last year
• raufs / skDER
  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.
  ☆48Updated last week
• lmlui / Jorg
  MAG Circularization Method
  ☆33Updated 3 years ago
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆43Updated last week
• Kalan-Lab / zol
  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
  ☆61Updated last week
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆32Updated last year
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated last year
• refresh-bio / PHIST
  Phage-Host Interaction Search Tool
  ☆27Updated last year
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆36Updated 3 months ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆54Updated 5 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆29Updated 2 months ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated last year
• wwood / galah
  More scalable dereplication for metagenome assembled genomes
  ☆63Updated this week
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆39Updated last month
• microbial-pangenomes-lab / microGWAS
  Bacterial GWAS analysis
  ☆43Updated 2 weeks ago
• ikmb / MAGScoT
  MAGScoT - a MAG scoring and refinement tool
  ☆35Updated 9 months ago
• rrwick / Verticall
  Recombination-free trees
  ☆59Updated 4 months ago
• HIT-ImmunologyLab / DBSCAN-SWA
  ☆34Updated last year
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆48Updated 2 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆28Updated 2 years ago
• hoelzer-lab / ribap
  A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs
  ☆29Updated 9 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆51Updated last year
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆30Updated last year
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆51Updated 3 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆85Updated 3 months ago
• linsalrob / sphae
  Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
  ☆34Updated last month
• a-h-b / binny
  ☆29Updated 2 years ago
• flass / pantagruel
  a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome
  ☆49Updated 2 years ago
• stajichlab / biosample_metadata
  Extract metadata from biosamples in NCBI
  ☆16Updated 4 years ago