PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
☆26Dec 4, 2023Updated 2 years ago
Alternatives and similar repositories for phantasm
Users that are interested in phantasm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 months ago
- Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.☆21Oct 27, 2026Updated last week
- Code for detecting genomic island insertions in clades of microbes.☆19Sep 14, 2023Updated 3 years ago
- Calculate assocations between genes and traits☆32Mar 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- tool to determine optimal refrerence genome given a set of fasta files☆15May 18, 2023Updated 3 years ago
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 2 months ago
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆56Sep 1, 2026Updated 2 months ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated 2 months ago
- Generate basic stats for an assembly.☆13Feb 12, 2023Updated 3 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆38Jun 4, 2026Updated 4 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Aggregate genome coverage☆13Oct 22, 2026Updated last week
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆92Oct 27, 2026Updated last week
- Extract SNPs and accessory differences in closely related bacterial genomes from k-mers☆10Jan 6, 2024Updated 2 years ago
- A bioinformatics software focused on quality control based on species criteria☆15Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Updated this week
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- 🐪Classification through yAML Heuristic Mapping Protocol 🐪☆10Jun 16, 2026Updated 4 months ago
- Tool intended to pull out sequences and annotations between insertion sites specified by the user.☆15Apr 10, 2026Updated 6 months ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jun 9, 2026Updated 4 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆26Jul 22, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆13Aug 13, 2024Updated 2 years ago
- Homology-based ANI estimation at unprecedented scales🦀☆25Oct 4, 2026Updated 3 weeks ago
- Bacterial GWAS analysis☆58Jun 12, 2026Updated 4 months ago
- rapid serotyping of Vibrio parahaemolyticus from whole genome sequencing data using serogroup-specific genes☆10Sep 2, 2021Updated 5 years ago
- Colinear block visualisation tool☆32Jan 17, 2024Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Oct 27, 2026Updated last week
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆42Oct 28, 2025Updated last year