dr-joe-wirth / phantasmLinks
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
☆24Updated last year
Alternatives and similar repositories for phantasm
Users that are interested in phantasm are comparing it to the libraries listed below
Sorting:
- IslandPath standalone software☆32Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Gene Absence Presence Identification tool.☆26Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆27Updated 7 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last week
- Prophage Activity Estimator☆26Updated last year
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG stand…☆14Updated 9 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 7 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆65Updated 2 weeks ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 2 years ago
- ☆20Updated 9 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- Extract metadata from biosamples in NCBI☆14Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated last month
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago