cjneely10 / EukMetaSanity
Structural and functional annotation of eukaryotic metagenome-assembled genomes
☆21Updated last year
Alternatives and similar repositories for EukMetaSanity:
Users that are interested in EukMetaSanity are comparing it to the libraries listed below
- ☆25Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- ☆18Updated 4 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 4 years ago
- Prophage Activity Estimator☆26Updated 7 months ago
- ☆24Updated 6 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆25Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- KEGG Module Evaluation Tool☆27Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 10 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆41Updated 3 weeks ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- ☆47Updated 9 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- Population genomics from metagenomes☆11Updated 4 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆25Updated 2 months ago
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- Gene Absence Presence Identification tool.☆26Updated last year
- ☆11Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆32Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated 9 months ago
- IslandPath standalone software☆31Updated last year