metashot / awemagsLinks
aweMAGs: a fully automated workflow for eukariotic MAGs
☆18Updated 2 years ago
Alternatives and similar repositories for awemags
Users that are interested in awemags are comparing it to the libraries listed below
Sorting:
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 10 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆83Updated last week
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆54Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- Gene Absence Presence Identification tool.☆27Updated 9 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆63Updated last month
- ☆56Updated 6 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated this week
- Downstream processing of VAMB binning for Viral Elucidation☆53Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Bifrost graph gene caller.☆97Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- ☆24Updated 7 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆36Updated 4 years ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆90Updated last month
- Binning Virus Genomes from Metagenomes☆68Updated 3 years ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆42Updated 2 months ago
- Calculate assocations between genes and traits☆29Updated 10 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆24Updated 4 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated last month
- ☆50Updated last month
- More scalable dereplication for metagenome assembled genomes☆75Updated 3 weeks ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- IslandPath standalone software☆34Updated 2 years ago