mgtools / MinPathLinks
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
☆23Updated 4 years ago
Alternatives and similar repositories for MinPath
Users that are interested in MinPath are comparing it to the libraries listed below
Sorting:
- Analysing Metagenomic Species (MGS)☆42Updated 5 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 10 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆67Updated last week
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 5 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- ☆40Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆32Updated 11 months ago
- http://huttenhower.sph.harvard.edu/waafle☆22Updated 11 months ago
- ☆21Updated 3 weeks ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Updated 2 weeks ago
- MAG Circularization Method☆32Updated last month
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆47Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Discover and annotate the virome☆54Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆37Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- ☆45Updated 2 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- ☆20Updated 8 years ago
- Pipeline for major biological analyses.☆35Updated 3 years ago
- ☆21Updated 5 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 3 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year