mgtools / MinPathLinks
MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
☆23Updated 4 years ago
Alternatives and similar repositories for MinPath
Users that are interested in MinPath are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated last month
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- ☆42Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆35Updated last month
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated 2 years ago
- Discover and annotate the virome☆53Updated last week
- ☆45Updated 2 years ago
- High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers☆43Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Analysing Metagenomic Species (MGS)☆42Updated 4 years ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- ☆28Updated 9 months ago
- Gene-flank analysis tool☆33Updated 10 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- strain-level analysis tools☆39Updated last year
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Set of utilities on sequences and BAM files☆26Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- IslandPath standalone software☆33Updated last year
- MAG Circularization Method☆32Updated 3 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- workflows for offline analysis of 16S rRNA Nanopore data☆16Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year