MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achieving a more conservative, yet more faithful, estimation of the biological pathways for a query dataset.
☆25Jun 9, 2021Updated 5 years ago
Alternatives and similar repositories for MinPath
Users that are interested in MinPath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- ☆15Oct 14, 2023Updated 3 years ago
- A pathway profiling tool designed for traversing metabolic pathway graphs, identifying most complete paths based on an evaluation set of …☆11Sep 10, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated 7 months ago
- Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)☆11May 27, 2022Updated 4 years ago
- MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques☆15Updated this week
- ☆14Sep 2, 2021Updated 5 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- ☆19Dec 16, 2024Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- ☆21Dec 15, 2020Updated 5 years ago
- Sparse Cooccurence Network Investigation for Compositional data☆26Oct 14, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Metagenomic Binning Algorithm☆55Updated this week
- Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Car…☆16Updated this week
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated last year
- ☆43Feb 14, 2021Updated 5 years ago
- Conversion software tool for producing both annotation and tree files for GraPhlAn☆11Feb 2, 2022Updated 4 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- ☆18Aug 27, 2026Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆66Sep 1, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Assessing the quality of prokaryotic genomes, filtering and dereplication☆10Aug 26, 2022Updated 4 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- ☆12Dec 28, 2019Updated 6 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 6 months ago
- ☆33Jul 16, 2023Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- ☆53May 29, 2026Updated 4 months ago
- MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies☆13Jan 31, 2026Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 10 months ago
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆32Jan 24, 2025Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆43Sep 17, 2025Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆96May 11, 2026Updated 5 months ago
- ⚔️ Find splicing-led, functional changes of the proteome.☆10Jun 18, 2019Updated 7 years ago
- ☆30Aug 2, 2026Updated 2 months ago