This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
☆39Jul 12, 2022Updated 4 years ago
Alternatives and similar repositories for Phosphorus-cycling-database
Users that are interested in Phosphorus-cycling-database are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆64Dec 30, 2020Updated 5 years ago
- ☆13Jul 27, 2026Updated 3 months ago
- This is an R package for element cycle analysis using metagenomic data.☆50Feb 2, 2026Updated 9 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆236Mar 24, 2026Updated 7 months ago
- ☆21Apr 1, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆53May 29, 2026Updated 5 months ago
- Comprehensive database for diazotroph nitrogenases, alternative nitrogenases, and nitrogenase-like enzymes at the University of North Car…☆16Oct 18, 2026Updated 2 weeks ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆22Mar 17, 2021Updated 5 years ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆17Dec 20, 2024Updated last year
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing☆16Oct 9, 2024Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆20Aug 7, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data☆23May 16, 2026Updated 5 months ago
- ☆11Feb 9, 2024Updated 2 years ago
- Normalized Stochasticity Ratio in community assembly☆31Oct 22, 2024Updated 2 years ago
- Deepurify is a tool to filter the contaminated contigs in a MAG with a language model.☆24Jun 3, 2025Updated last year
- CCTyper: Automatic detection and subtyping of CRISPR-Cas operons☆112Sep 15, 2026Updated last month
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆19May 30, 2023Updated 3 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- ☆65Feb 27, 2024Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32May 22, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scripts for calculating features and regression of prokaryote OGT☆27Feb 13, 2024Updated 2 years ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆85Sep 8, 2025Updated last year
- modify: BacMet database and BacMet-Scan_v1.1.pl☆10Jun 26, 2023Updated 3 years ago
- ☆19Jan 12, 2026Updated 9 months ago
- A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deep…☆61Apr 30, 2026Updated 6 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆21Feb 18, 2026Updated 8 months ago
- Horizontal gene transfer (HGT) identification pipeline☆74May 17, 2023Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- We developed a dual-channel model named LucaPCycle, based on the raw sequence and protein language large models, to predict whether a pro…☆38Apr 28, 2026Updated 6 months ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Quorum sensing gene database for archaea and bacteria☆10Aug 31, 2023Updated 3 years ago
- FEDKEA: Fine-tuned ESM-2 and Distance-based KNN for Enzyme Annotation☆12Oct 31, 2025Updated last year
- Hydrocarbon biodegradation gene annotation☆20Jul 14, 2022Updated 4 years ago
- Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER☆12Jan 13, 2026Updated 9 months ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 10 months ago