LottePronk / whokaryoteLinks
Classify metagenomic contigs as eukaryotic or prokaryotic
☆37Updated 2 years ago
Alternatives and similar repositories for whokaryote
Users that are interested in whokaryote are comparing it to the libraries listed below
Sorting:
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- Bacterial GWAS analysis☆40Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- IslandPath standalone software☆32Updated last year
- KEGG Module Evaluation Tool☆30Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- ☆23Updated 4 months ago
- Jaeger is a quick and precise tool for detecting phages in sequence assemblies.☆31Updated this week
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- ☆20Updated 9 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- ☆26Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆16Updated last month
- Calculate assocations between genes and traits☆23Updated 3 months ago
- MAG Circularization Method☆33Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆46Updated 3 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Unified Human Gut Virome Catalog☆32Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- ☆25Updated 6 years ago
- Discover and annotate the virome☆43Updated 2 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week