LottePronk / whokaryoteLinks
Classify metagenomic contigs as eukaryotic or prokaryotic
☆42Updated 2 years ago
Alternatives and similar repositories for whokaryote
Users that are interested in whokaryote are comparing it to the libraries listed below
Sorting:
- Downstream processing of VAMB binning for Viral Elucidation☆52Updated last year
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Bacterial GWAS analysis☆46Updated last month
- Automatic eukaryotic taxonomic classification☆28Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆70Updated 2 weeks ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆20Updated 2 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 4 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 7 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆39Updated 3 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 8 months ago
- Prophage Activity Estimator☆28Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated last month
- Calculate assocations between genes and traits☆29Updated 9 months ago
- IslandPath standalone software☆34Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- ☆24Updated 7 years ago
- ☆54Updated 5 months ago
- ☆33Updated last year
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆61Updated last week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- ☆26Updated 2 years ago
- ☆13Updated 8 years ago
- MAG Circularization Method☆32Updated last month
- A taxonomic classifier of plasmids☆28Updated 4 years ago