LottePronk / whokaryoteLinks
Classify metagenomic contigs as eukaryotic or prokaryotic
☆43Updated 2 years ago
Alternatives and similar repositories for whokaryote
Users that are interested in whokaryote are comparing it to the libraries listed below
Sorting:
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 10 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 5 months ago
- Bacterial GWAS analysis☆46Updated last week
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆54Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated last month
- Calculate assocations between genes and traits☆29Updated 10 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆46Updated 9 months ago
- ☆24Updated 11 months ago
- Prophage Activity Estimator☆30Updated last year
- Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny☆57Updated 7 months ago
- ☆24Updated 7 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 3 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆35Updated 2 years ago
- IslandPath standalone software☆35Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- Discover and annotate the virome☆58Updated 3 months ago
- ☆20Updated 2 years ago
- ☆20Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆33Updated 6 years ago
- ☆56Updated 6 months ago
- More scalable dereplication for metagenome assembled genomes☆75Updated last month
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- ☆26Updated 2 years ago
- ☆34Updated 2 years ago