Linking MAGs with 16S rRNA marker genes
☆27Feb 8, 2025Updated last year
Alternatives and similar repositories for MarkerMAG
Users that are interested in MarkerMAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆15May 4, 2026Updated last week
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 10 months ago
- ☆15Oct 14, 2023Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆18Nov 24, 2025Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- ☆59Apr 8, 2026Updated last month
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 6 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated last year
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆18Feb 17, 2026Updated 2 months ago
- ☆13Apr 30, 2026Updated last week
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆213Mar 5, 2026Updated 2 months ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- ☆25Jun 20, 2023Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- MAGinator - Accurate SNV calling and profiling of MAGs☆27Mar 23, 2026Updated last month
- alignment-free coverage calculation for metagenomic binning >100 times faster☆51Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to estimate genome quality of microbial eukaryotes☆41Aug 1, 2025Updated 9 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Apr 29, 2026Updated last week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆225Mar 24, 2026Updated last month
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆24Jun 9, 2021Updated 4 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 2 months ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 7 years ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated 2 months ago
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated last year
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Apr 29, 2026Updated last week
- Phage-Host Interaction Search Tool☆30Jul 8, 2024Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆259Mar 20, 2025Updated last year
- ☆10Mar 29, 2025Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆71May 17, 2023Updated 2 years ago