songweizhi / MarkerMAGLinks
Linking MAGs with 16S rRNA marker genes
☆24Updated 4 months ago
Alternatives and similar repositories for MarkerMAG
Users that are interested in MarkerMAG are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated 11 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- ☆25Updated 6 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆42Updated 8 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- ☆41Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Discover and annotate the virome☆43Updated 2 months ago
- ☆20Updated 9 months ago
- A workflow and scripts for large-scale antiSMASH analyses☆41Updated 2 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆35Updated 3 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆14Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated 2 months ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆52Updated last year
- ☆32Updated 4 months ago
- Strain Resolution ON Graphs☆48Updated last year
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago
- KEGG Module Evaluation Tool☆30Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- ☆54Updated last year