songweizhi / MarkerMAG
Linking MAGs with 16S rRNA marker genes
☆24Updated 2 years ago
Alternatives and similar repositories for MarkerMAG:
Users that are interested in MarkerMAG are comparing it to the libraries listed below
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated 11 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- MAG Circularization Method☆33Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆47Updated 6 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆31Updated 2 years ago
- Assessing and Improving the quality of metagenomic assemblies☆27Updated 2 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 9 months ago
- Prophage Activity Estimator☆26Updated 7 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆37Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- ☆24Updated 6 years ago
- A workflow and scripts for large-scale antiSMASH analyses☆33Updated 3 weeks ago
- ☆42Updated 3 years ago
- ☆18Updated 4 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆40Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- ☆25Updated 11 months ago
- Strain Resolution ON Graphs☆47Updated last year
- Discover and annotate the virome☆35Updated 3 months ago
- Taxonomic classification of viruses at Order and Family level☆19Updated last year
- ☆25Updated last year
- ☆47Updated 9 months ago
- MAGScoT - a MAG scoring and refinement tool☆31Updated 3 months ago
- KEGG Module Evaluation Tool☆27Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆21Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆19Updated last year