songweizhi / MarkerMAG
Linking MAGs with 16S rRNA marker genes
☆24Updated 3 months ago
Alternatives and similar repositories for MarkerMAG:
Users that are interested in MarkerMAG are comparing it to the libraries listed below
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆49Updated 10 months ago
- MAG Circularization Method☆33Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 2 weeks ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆40Updated 6 months ago
- ☆24Updated 6 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆40Updated 2 years ago
- Prophage Activity Estimator☆26Updated 11 months ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆48Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated this week
- Strain Resolution ON Graphs☆47Updated last year
- ☆20Updated 8 months ago
- ☆31Updated 2 months ago
- Unified Human Gut Virome Catalog☆31Updated 9 months ago
- Discover and annotate the virome☆42Updated 3 weeks ago
- KEGG Module Evaluation Tool☆29Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆34Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 3 weeks ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated last year
- ☆50Updated last year
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆53Updated last week