Linking MAGs with 16S rRNA marker genes
☆27Feb 8, 2025Updated last year
Alternatives and similar repositories for MarkerMAG
Users that are interested in MarkerMAG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated last month
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆23Aug 20, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Feb 14, 2024Updated 2 years ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆18Aug 7, 2026Updated 3 weeks ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Prediction of microbial interactions in complex communities☆14Aug 14, 2024Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 9 months ago
- ☆63Jul 16, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 9 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆55Jul 3, 2024Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Jun 10, 2026Updated 2 months ago
- Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks☆220Updated this week
- ☆14Updated this week
- ☆27Jun 20, 2023Updated 3 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 6 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Updated this week
- Tool to estimate genome quality of microbial eukaryotes☆45Aug 14, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- alignment-free coverage calculation for metagenomic binning >100 times faster☆56May 8, 2026Updated 3 months ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 5 months ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 5 months ago
- MinPath (Minimal set of Pathways) is a parsimony approach for biological pathway reconstructions using protein family predictions, achiev…☆26Jun 9, 2021Updated 5 years ago
- Parser for Ghost Koala☆10Aug 23, 2018Updated 8 years ago
- GEne Cluster prediction with COnditional random fields.☆87Jul 29, 2026Updated last month
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Phage-Host Interaction Search Tool☆33Jul 8, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Aug 5, 2026Updated 3 weeks ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- ☆12Mar 29, 2025Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆70May 17, 2023Updated 3 years ago