songweizhi / MarkerMAG
Linking MAGs with 16S rRNA marker genes
☆24Updated last month
Alternatives and similar repositories for MarkerMAG:
Users that are interested in MarkerMAG are comparing it to the libraries listed below
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆18Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆38Updated 5 months ago
- Downstream processing of VAMB binning for Viral Elucidation☆48Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆58Updated 3 weeks ago
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆33Updated last month
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆33Updated 3 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Discover and annotate the virome☆39Updated 5 months ago
- ☆24Updated 6 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 7 months ago
- ☆20Updated 6 months ago
- Prophage Activity Estimator☆26Updated 9 months ago
- ☆49Updated 11 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 5 months ago
- ☆29Updated last month
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆27Updated last month
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆19Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- ☆26Updated 11 months ago
- Assessing and Improving the quality of metagenomic assemblies☆28Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆44Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated 2 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆40Updated last year
- ☆28Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆23Updated last month
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆23Updated 2 weeks ago
- KEGG Module Evaluation Tool☆29Updated last year