Arkadiy-Garber / MagicLampLinks
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
☆14Updated last year
Alternatives and similar repositories for MagicLamp
Users that are interested in MagicLamp are comparing it to the libraries listed below
Sorting:
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- ☆26Updated 2 years ago
- Prediction of microbial interactions in complex communities☆11Updated last year
- A Hierarchical Approach to Pangenomics Inference☆13Updated last year
- ☆14Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- Population genomics from metagenomes☆12Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Updated 3 years ago
- ☆22Updated 4 years ago
- ☆22Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆22Updated last year
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆20Updated 2 years ago
- ☆17Updated 8 months ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Updated 2 weeks ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Bacterial taxonomy construction and evaluation in R☆15Updated 2 years ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆40Updated 4 years ago
- ☆13Updated 8 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Updated 3 years ago
- Finding regions of similarity between plasmids☆17Updated 3 years ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- This is a repository for CAMPER.☆16Updated last year
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Updated last year
- HMmer Based UndeRstandinG of gene clustERs☆15Updated this week
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Updated 2 months ago