A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
☆14Apr 4, 2026Updated last week
Alternatives and similar repositories for MagicLamp
Users that are interested in MagicLamp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆66Mar 2, 2022Updated 4 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Jul 27, 2022Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- A collection of python and bash scripts for various bioinformatics-related tasks☆12Sep 19, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 4 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆13Mar 14, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 3 months ago
- ☆25Jun 20, 2023Updated 2 years ago
- ☆51Mar 29, 2026Updated 2 weeks ago
- Scripts for calculating features and regression of prokaryote OGT☆25Feb 13, 2024Updated 2 years ago
- This is a repository for CAMPER.☆17Mar 18, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A pipeline for whole genome assembly☆16Apr 21, 2022Updated 3 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Sep 14, 2021Updated 4 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10May 17, 2024Updated last year
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- ☆17May 13, 2025Updated 10 months ago
- ☆49Mar 13, 2024Updated 2 years ago
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15Mar 20, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 6 months ago
- DiTing: A pipeline to infer and compare biogeochemical pathways in metagenomic data☆51Mar 12, 2026Updated 3 weeks ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated last month
- ☆10Mar 29, 2025Updated last year
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆65Mar 4, 2026Updated last month
- Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t☆12Feb 23, 2025Updated last year
- ☆57Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆30Jun 13, 2023Updated 2 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- KEGG Module Evaluation Tool☆33Mar 5, 2026Updated last month
- Systematic search of all known anti-phage systems.☆151Apr 2, 2026Updated last week
- A script for comparing old vs new versions of genome annotations☆22Aug 1, 2023Updated 2 years ago
- ☆22Apr 3, 2023Updated 3 years ago
- Find Prokaryotic DNA methylase genes in proteins, contigs, or genomes☆11Jan 23, 2026Updated 2 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆92Mar 30, 2026Updated last week
- Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.☆42Jun 14, 2023Updated 2 years ago