A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
☆20Aug 7, 2026Updated 2 months ago
Alternatives and similar repositories for MagicLamp
Users that are interested in MagicLamp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆71Sep 14, 2026Updated last month
- Protocol for finding informative protein families and then using them to score omic samples☆19Jul 27, 2022Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- ☆19Updated this week
- A pipeline for whole genome assembly☆18Apr 21, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A collection of python and bash scripts for various bioinformatics-related tasks☆13Sep 19, 2024Updated 2 years ago
- A Snakemake workflow for recovery of plastid genomes from metagenomic samples☆11Nov 16, 2024Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- Repository for GreeningLab metabolic marker gene databases☆14May 28, 2026Updated 5 months ago
- ☆57Sep 17, 2026Updated last month
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆67Apr 22, 2026Updated 6 months ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- Hydrocarbon biodegradation gene annotation☆20Jul 14, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆32May 25, 2021Updated 5 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- Count and compare 16S rRNA genes within a genus☆17Aug 1, 2024Updated 2 years ago
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 10 months ago
- Leviathan: Fast, memory-efficient, and scalable taxonomic and pathway profiling for (pan)genome-resolved metagenomics and metatranscripto…☆30Updated this week
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆13Sep 13, 2024Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Jan 20, 2023Updated 3 years ago
- HMmer Based UndeRstandinG of gene clustERs☆15Feb 6, 2026Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated last year
- This repository releases the model weights of ANNA16, an end-to-end tool that predicts 16S rRNA gene copy number (GCN) from 16S rRNA sequ…☆12Updated this week
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Jun 13, 2023Updated 3 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Binning Virus Genomes from Metagenomes☆78Jul 13, 2022Updated 4 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 5 years ago
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆11May 17, 2024Updated 2 years ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆47Feb 17, 2023Updated 3 years ago
- GEne Cluster prediction with COnditional random fields.☆90Jul 29, 2026Updated 3 months ago
- ☆53May 29, 2026Updated 5 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15Jul 26, 2026Updated 3 months ago