Arkadiy-Garber / MagicLamp
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
☆13Updated 7 months ago
Alternatives and similar repositories for MagicLamp:
Users that are interested in MagicLamp are comparing it to the libraries listed below
- Metabolic scanning and annotation of Metagenomes☆10Updated 2 months ago
- ☆25Updated last year
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 11 months ago
- Population genomics from metagenomes☆11Updated 6 months ago
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆18Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆11Updated 2 months ago
- ☆22Updated last year
- ☆13Updated last year
- A Hierarchical Approach to Pangenomics Inference☆11Updated 10 months ago
- ☆19Updated 3 years ago
- scripts for microbiome analysis☆11Updated 7 months ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- This is a repository for CAMPER.☆12Updated 11 months ago
- ☆16Updated 2 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- ☆13Updated 7 years ago
- ☆15Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Updated last week
- Identify and remove contaminants from metagenome-assembled genomes☆18Updated last year
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated this week
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 7 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated 2 months ago
- ☆11Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 4 months ago