Arkadiy-Garber / MagicLamp
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
☆13Updated 6 months ago
Alternatives and similar repositories for MagicLamp:
Users that are interested in MagicLamp are comparing it to the libraries listed below
- Metabolic scanning and annotation of Metagenomes☆10Updated last month
- ☆25Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆12Updated 10 months ago
- Population genomics from metagenomes☆11Updated 4 months ago
- ☆11Updated last year
- ☆19Updated 2 years ago
- This is a repository for CAMPER.☆12Updated 10 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆17Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 6 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆17Updated 11 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- ☆16Updated last month
- A Hierarchical Approach to Pangenomics Inference☆11Updated 9 months ago
- ☆13Updated 7 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 months ago
- ☆22Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆9Updated 3 years ago
- Prediction of microbial interactions in complex communities☆12Updated 5 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago
- Hybrid Assembler for Plasmids☆10Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆30Updated 5 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆22Updated last year
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆20Updated last month
- Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes☆10Updated 8 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆21Updated last year
- cognac: COre GeNe Alignment Concatenation☆9Updated 3 years ago
- Bacterial taxonomy construction and evaluation in R☆13Updated last year
- Prophage Activity Estimator☆26Updated 8 months ago
- Dadaist2 🟨 Highway to R☆13Updated 2 weeks ago