Alternatives and similar repositories for iVirP

Users that are interested in iVirP are comparing it to the libraries listed below

• npavlovikj / ProkEvo
  ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
  ☆18Updated 4 years ago
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• WrightonLabCSU / CAMPER
  This is a repository for CAMPER.
  ☆15Updated last year
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆12Updated last year
• faylward / pangenomics
  Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…
  ☆11Updated 4 years ago
• timghaly / EcoFoldDB
  Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.
  ☆24Updated 3 weeks ago
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆21Updated 2 years ago
• 01life / ViromeFlowX
  ☆10Updated last month
• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆29Updated 7 months ago
• djw533 / hamburger
  HMmer Based UndeRstandinG of gene clustERs
  ☆15Updated 6 months ago
• ZiyueYang01 / VirID
  VirID: An integrated platform for the discovery and characterization of RNA Viruses
  ☆22Updated 9 months ago
• michaelkyu / MobMess
  ☆21Updated 3 years ago
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆32Updated last year
• viralInformatics / VIGA
  ☆14Updated 6 months ago
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆13Updated 2 months ago
• yosuken / ViPTreeGen
  a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree
  ☆33Updated 3 years ago
• cmmr / Marker-MAGu
  Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes
  ☆22Updated this week
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• rcedgar / palm_annot
  Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
  ☆11Updated 4 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• yosuken / ccfind
  ccfind - circular complete genome finder with clues of terminal redundancy
  ☆16Updated 5 years ago
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated last year
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• gcremers / metascan
  Metabolic scanning and annotation of Metagenomes
  ☆10Updated 8 months ago
• ecbush / xenoGI
  Code for detecting genomic island insertions in clades of microbes.
  ☆19Updated 2 years ago
• ablab / metaGT
  Pipeline for metagenome and metatranscriptome joint assembly
  ☆21Updated 2 years ago
• AlvaroRodriguezDelRio / nov-fams-pipeline
  ☆11Updated 8 months ago
• bacpop / CELEBRIMBOR
  Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs
  ☆25Updated last year
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated this week
• bhattlab / phanta
  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes
  ☆66Updated 2 months ago