Alternatives and similar repositories for iVirP

Users that are interested in iVirP are comparing it to the libraries listed below

• Finn-Lab / SanntiS
  SMBGC Annotation using Neural Networks Trained on Interpro Signatures
  ☆28Updated 4 months ago
• npavlovikj / ProkEvo
  ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.
  ☆19Updated 4 years ago
• songweizhi / BioSAK
  A Swiss-Army-Knife for Bioinformaticians
  ☆12Updated this week
• wclose / viralMetagenomicsPipeline
  Pipeline for metagenomic community analysis using DNA isolated from virus-like particles
  ☆13Updated 5 years ago
• statdivlab / happi
  A Hierarchical Approach to Pangenomics Inference
  ☆12Updated last year
• 01life / ViromeFlowX
  ☆10Updated 3 months ago
• TheSEED / RASTtk-Distribution
  KBase distribution module for RASTtk.
  ☆13Updated 4 years ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• qiyunlab / binarena
  BinaRena: Interactive Visualization and Binning of Metagenomic Contigs
  ☆33Updated last year
• SushiLab / mVIRs
  ☆13Updated last year
• AuReMe / mpwt
  Pathway Tools multiprocessing wrapper (for PathoLogic).
  ☆14Updated 2 weeks ago
• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated last month
• rcedgar / palm_annot
  Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences
  ☆11Updated last month
• segrelab / MiCoNE
  The Microbial Co-occurrence Network Explorer
  ☆22Updated last year
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 4 years ago
• faylward / pangenomics
  Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…
  ☆11Updated 4 years ago
• JLSteenwyk / orthohmm
  Improved Inference of Ortholog Groups using Hidden Markov Models
  ☆37Updated 6 months ago
• WrightonLabCSU / CAMPER
  This is a repository for CAMPER.
  ☆14Updated last year
• omixer / omixer-rpmR
  An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles
  ☆12Updated 2 years ago
• christophertbrown / bioscripts
  some useful scripts for working with genomics and sequencing data
  ☆18Updated 5 years ago
• NBChub / bgcflow
  Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
  ☆47Updated 8 months ago
• djw533 / hamburger
  HMmer Based UndeRstandinG of gene clustERs
  ☆15Updated 3 months ago
• WangLab-SCSIO / Prophage_Tracer
  Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment
  ☆24Updated 10 months ago
• KoslickiLab / MetagenomicKG
  ☆16Updated last week
• viralInformatics / VIGA
  ☆13Updated 3 months ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆40Updated last year
• NancyZxll / temperate-phage-active-prophage-detection
  detect temperate phage (active prophage) in assembled bacterial genome sequences
  ☆14Updated 3 years ago
• BioSina / Panakeia
  Prokaryotic Pangenome Analysis
  ☆24Updated 3 years ago
• NeLLi-team / gvclass
  ☆16Updated 3 weeks ago