li-bw18 / iVirPLinks
Integrative virome pipeline
☆13Updated 10 months ago
Alternatives and similar repositories for iVirP
Users that are interested in iVirP are comparing it to the libraries listed below
Sorting:
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆28Updated 5 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 4 years ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Updated 5 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆23Updated this week
- HMmer Based UndeRstandinG of gene clustERs☆15Updated 4 months ago
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- ☆10Updated 4 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆47Updated 9 months ago
- Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment☆24Updated 11 months ago
- ☆12Updated last year
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- This is a repository for CAMPER.☆15Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆64Updated 2 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C…☆11Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.☆16Updated 2 weeks ago
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 weeks ago
- Fast and sensitive discovery of complete phages and prophages in bacterial genome sequences☆21Updated 9 months ago
- Metabolic scanning and annotation of Metagenomes☆10Updated 6 months ago
- A snakemake workflow for metagenomic projects☆14Updated 2 years ago
- A simple program to classify the lifestyle of phages.☆17Updated 2 years ago
- ☆16Updated last month
- MAG Circularization Method☆32Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- ☆18Updated 4 years ago