li-bw18 / iVirPLinks
Integrative virome pipeline
☆13Updated 8 months ago
Alternatives and similar repositories for iVirP
Users that are interested in iVirP are comparing it to the libraries listed below
Sorting:
- ☆10Updated 2 months ago
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆12Updated 5 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 3 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated 3 months ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆20Updated last year
- A Swiss-Army-Knife for Bioinformaticians☆12Updated 3 weeks ago
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree☆30Updated 2 years ago
- KBase distribution module for RASTtk.☆13Updated 4 years ago
- Influenza genome analysis Nextflow workflow☆28Updated 3 months ago
- A pipeline for whole genome assembly☆16Updated 3 years ago
- This is a repository for CAMPER.☆14Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆16Updated last month
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Updated 2 years ago
- ☆16Updated 2 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 5 years ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆43Updated 6 months ago
- ☆13Updated last year
- detect temperate phage (active prophage) in assembled bacterial genome sequences☆14Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Pan-genome Analysis☆12Updated 2 months ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆28Updated last week
- Pipeline for major biological analyses.☆35Updated 3 years ago
- MAG Circularization Method☆33Updated 3 years ago
- ☆13Updated last month