The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
☆29Jul 21, 2022Updated 4 years ago
Alternatives and similar repositories for PIGC
Users that are interested in PIGC are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- ☆21Feb 13, 2020Updated 6 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆35Aug 16, 2022Updated 4 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Apr 18, 2021Updated 5 years ago
- This is a repository for CAMPER.☆18Mar 18, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- vaginal microbiota☆13Jan 21, 2025Updated last year
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆26Feb 14, 2026Updated 8 months ago
- iMeta teaches you to plot☆57Apr 26, 2023Updated 3 years ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated 2 years ago
- R code for analyses in the manuscript "Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhi…☆10Mar 19, 2021Updated 5 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 6 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 3 weeks ago
- ☆15Sep 15, 2022Updated 4 years ago
- ☆21Mar 15, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 3 years ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆226Sep 29, 2026Updated last month
- ☆86Aug 23, 2026Updated 2 months ago
- ☆65Feb 27, 2024Updated 2 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆31Jan 15, 2026Updated 9 months ago
- ☆21Dec 15, 2020Updated 5 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆80Updated this week
- Fast pairwise transmission inference from single genome and/or metagenomic data☆40Aug 21, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MGnify genome analysis pipeline☆114Oct 28, 2026Updated last week
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Microbial ecological network visualization clustering☆156Sep 29, 2026Updated last month
- Linking MAGs with 16S rRNA marker genes☆27Feb 8, 2025Updated last year
- R package for microbiome biomarker discovery☆199Feb 19, 2025Updated last year
- MetaflowX: A Scalable and Resource-Efficient Workflow for Multi-Strategy Metagenomic Analysis☆43Feb 6, 2026Updated 9 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆29Feb 19, 2026Updated 8 months ago
- Instantaneous Metagenome Taxonomic Profiling with MetaKSSD☆27Nov 3, 2025Updated last year
- Analysing Metagenomic Species (MGS)☆41Nov 12, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated 2 years ago
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- R tools for reconstructing metabolisms.☆18May 13, 2026Updated 5 months ago
- Easy Metagenome Pipeline☆588Updated this week
- This repository contains python classes and functions to quickly create a profiling tool for pathogen NGS data☆14Oct 25, 2026Updated last week
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆27Jan 20, 2026Updated 9 months ago