zhouyunyan / PIGC
The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
☆26Updated 2 years ago
Alternatives and similar repositories for PIGC:
Users that are interested in PIGC are comparing it to the libraries listed below
- ☆50Updated 11 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆59Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Improvement of metagenome-assembled genomes☆50Updated 5 years ago
- ☆51Updated last year
- ☆48Updated 4 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- ☆41Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆57Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- Binning Virus Genomes from Metagenomes☆62Updated 2 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆44Updated 4 years ago
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- ☆28Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- code repo for mobileOG-db☆34Updated 2 months ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 11 months ago
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆66Updated 7 months ago
- Local version of the virus identification and analysis web server (tool set)☆44Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- ☆25Updated last year
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations