Alternatives and similar repositories for PIGC

Users that are interested in PIGC are comparing it to the libraries listed below

• caozhichongchong / arg_ranker
  ☆32Updated last month
• ziyewang / MetaBinner
  ☆56Updated last year
• DeniRibicic / q2ONT
  Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2
  ☆30Updated 5 years ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆42Updated 2 years ago
• songweizhi / MetaCHIP
  Horizontal gene transfer (HGT) identification pipeline
  ☆61Updated 2 years ago
• qichao1984 / NCyc
  ☆49Updated 4 years ago
• hildebra / lotus2
  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
  ☆54Updated last month
• ZengJiaxiong / Phosphorus-cycling-database
  This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.
  ☆31Updated 3 years ago
• linxingchen / cobra
  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…
  ☆72Updated 3 weeks ago
• allind / EukDetect
  ☆52Updated 2 weeks ago
• biobakery / maaslin3
  MaAsLin3: Microbiome Multivariate Association with Linear Models
  ☆38Updated 2 weeks ago
• biofuture / Ublastx_stageone
  This is the source code for multisamples ARGs profiling using SARG2.0 database
  ☆47Updated 4 years ago
• mdsufz / MuDoGeR
  MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.
  ☆86Updated 11 months ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆21Updated 2 years ago
• snayfach / MAGpurify
  Improvement of metagenome-assembled genomes
  ☆53Updated 5 years ago
• Finn-Lab / MAG_Snakemake_wf
  Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
  ☆60Updated 4 years ago
• TingtZHENG / VirMiner
  Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates
  ☆18Updated 4 years ago
• AnantharamanLab / ViWrap
  A wrapper to identify, bin, classify, and predict host-viral relationship for viruses
  ☆74Updated 6 months ago
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆56Updated last year
• clb21565 / mobileOG-db
  code repo for mobileOG-db
  ☆39Updated last month
• hoelzer / pocp
  Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.
  ☆26Updated 2 months ago
• snayfach / MicrobeCensus
  MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
  ☆46Updated 5 years ago
• xiaole99 / ARGs-OAP-v2.0-development
  This is the source code for ARGs-OAP v2.0 construction
  ☆12Updated 5 years ago
• liaochenlanruo / pgcgap
  The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline
  ☆38Updated 2 years ago
• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆19Updated last year
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆86Updated last year
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆43Updated last month
• treangenlab / emu
  ☆54Updated 5 months ago