zhouyunyan / PIGCView external linksLinks
The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
☆29Jul 21, 2022Updated 3 years ago
Alternatives and similar repositories for PIGC
Users that are interested in PIGC are comparing it to the libraries listed below
Sorting:
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- iMeta teaches you to plot☆57Apr 26, 2023Updated 2 years ago
- bioinformatics learning☆13Oct 10, 2023Updated 2 years ago
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Dec 19, 2022Updated 3 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Apr 18, 2021Updated 4 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆154Jan 23, 2026Updated 3 weeks ago
- ☆21Feb 13, 2020Updated 6 years ago
- ☆22Feb 7, 2022Updated 4 years ago
- ☆63Feb 27, 2024Updated last year
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 7 years ago
- Microbiome Analysis Plotting and Visualization☆12Feb 4, 2026Updated last week
- ☆12Dec 4, 2023Updated 2 years ago
- Figures for the CHM13 T2T SD paper.☆10Sep 12, 2021Updated 4 years ago
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- ☆34Aug 8, 2025Updated 6 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated 10 months ago
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 3 months ago
- ☆12Feb 22, 2022Updated 3 years ago
- ☆15Feb 3, 2023Updated 3 years ago
- PowerBacGWAS: Power calculations for Bacterial GWAS☆13Feb 2, 2022Updated 4 years ago
- Radboud Summer Course 7/2021 https://www.ru.nl/radboudsummerschool/courses/2021/brain-bacteria-behaviour/☆12Aug 12, 2021Updated 4 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆142Dec 17, 2025Updated last month
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆27Updated this week
- A method for reconstruction of subspecies composition and functional profiles from metagenomic data☆13May 27, 2024Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 5 years ago
- some useful scripts for working with genomics and sequencing data☆17Oct 31, 2019Updated 6 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 3 years ago
- Metagenomics Taxonomic Reads Assembly Single-Species☆16May 25, 2023Updated 2 years ago
- ☆21Mar 15, 2023Updated 2 years ago
- ☆19Apr 1, 2025Updated 10 months ago
- High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis☆15Jan 16, 2023Updated 3 years ago
- An algorithm for clustering metagenomic sequences.☆40Dec 12, 2025Updated 2 months ago
- Nature Communications | BASALT (Binning Across a Series of Assemblies Toolkit) for binning and refinement of short- and long-read sequenc…☆127Updated this week
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated 2 weeks ago
- A 'time'-like utility for Unix that measures peak memory usage☆18Jun 5, 2024Updated last year
- A functional profiler for metagenomes using FracMinHash☆20Jul 14, 2025Updated 7 months ago
- METAgenomic LONgitudinal Differential Abundance method☆16Dec 17, 2019Updated 6 years ago
- MGnify genome analysis pipeline☆108Jan 9, 2026Updated last month