zhouyunyan / PIGCLinks
The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
☆27Updated 2 years ago
Alternatives and similar repositories for PIGC
Users that are interested in PIGC are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- ☆29Updated last week
- ☆50Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- A pipeline for nanopore long-read metagenomic analysis.☆37Updated last week
- ☆54Updated last year
- Reproducible Analyses accompanying DADA2 + PacBio Manuscript☆33Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆46Updated 3 years ago
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆38Updated 2 years ago
- ☆41Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆47Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆58Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- Binning Virus Genomes from Metagenomes☆63Updated 2 years ago
- ☆49Updated 4 years ago
- code repo for mobileOG-db☆37Updated last week
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆46Updated 5 years ago
- ☆17Updated 6 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆36Updated 2 months ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆35Updated last week
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 4 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 10 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆41Updated 7 months ago