zhouyunyan / PIGCLinks
The construction of reference gene catalog and metagenome-assembled genomes of pig gut microbiome.
☆28Updated 3 years ago
Alternatives and similar repositories for PIGC
Users that are interested in PIGC are comparing it to the libraries listed below
Sorting:
- A pipeline for nanopore long-read metagenomic analysis.☆47Updated 4 months ago
- ☆50Updated 4 years ago
- Horizontal gene transfer (HGT) identification pipeline☆63Updated 2 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆47Updated last week
- ☆58Updated last year
- The Prokaryotic Genomics and Comparative Genomics Analysis Pipeline☆39Updated 2 years ago
- code repo for mobileOG-db☆40Updated 4 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆79Updated 9 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 4 months ago
- ☆53Updated 3 months ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆49Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆42Updated 2 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆29Updated 5 years ago
- ☆71Updated last week
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆58Updated last year
- A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during…☆76Updated last month
- ☆28Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆45Updated 5 years ago
- Snakemake workflow to detect and classify viruses in metagenome assemblies.☆19Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆87Updated last year
- ☆40Updated 4 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- CLI tool to annotate genes with KOfam☆86Updated 2 years ago
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆48Updated 2 years ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆15Updated 4 years ago
- ☆61Updated last year
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Updated 5 years ago
- ☆34Updated 4 months ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆49Updated 3 years ago