A metatranscriptomic pipeline optimized for the study of microeukaryotes.
☆17Dec 30, 2025Updated 2 months ago
Alternatives and similar repositories for eukrhythmic
Users that are interested in eukrhythmic are comparing it to the libraries listed below
Sorting:
- Automatic eukaryotic taxonomic classification☆29May 9, 2025Updated 9 months ago
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22May 14, 2023Updated 2 years ago
- ☆26Jun 20, 2023Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆38Aug 1, 2025Updated 6 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Query sequence database by HMMs arranged in predefined synteny structure☆13Nov 3, 2023Updated 2 years ago
- Gmove is a gene prediction tool☆21Oct 9, 2024Updated last year
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 17, 2026Updated last week
- Prediction of microbial interactions in complex communities☆11Aug 14, 2024Updated last year
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆33Jul 12, 2022Updated 3 years ago
- tiara – a tool for DNA sequence classification☆76Mar 2, 2024Updated last year
- re-assembly and analysis of the Marine Microbial Eukaryotic Transcriptome Sequencing Project☆14Sep 18, 2018Updated 7 years ago
- Comparative Metatranscriptomics Workflow☆10Jul 9, 2020Updated 5 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆78Jun 17, 2024Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆15Dec 11, 2024Updated last year
- This is a repository for CAMPER.☆16Mar 18, 2024Updated last year
- Chorus: Heterogeneous GPU+CPU Multiple Protein Sequences Alignment Search for Large Database☆17Apr 7, 2025Updated 10 months ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Mar 31, 2022Updated 3 years ago
- ☆14Sep 2, 2021Updated 4 years ago
- Meta-Omics Software for Community Analysis☆37Nov 4, 2024Updated last year
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆202Aug 25, 2025Updated 6 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 4 years ago
- ☆21Mar 15, 2023Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- A fork of Prodigal meant to improve gene calling for giant viruses and viruses that use alternative genetic codes☆49Oct 12, 2023Updated 2 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆18Aug 16, 2021Updated 4 years ago
- ☆50Jan 4, 2026Updated last month
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆20Jun 6, 2023Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆82Mar 2, 2023Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Mar 13, 2025Updated 11 months ago
- ☆45Jun 27, 2023Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Mar 22, 2024Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆99Feb 8, 2026Updated 2 weeks ago
- Code to generate re-assemblies of the Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP)☆23Apr 14, 2019Updated 6 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24Feb 12, 2026Updated 2 weeks ago
- ☆22Feb 7, 2022Updated 4 years ago