elizabethmcd / metabolisHMMLinks
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
☆18Updated 3 years ago
Alternatives and similar repositories for metabolisHMM
Users that are interested in metabolisHMM are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆33Updated 3 years ago
- ☆22Updated 4 months ago
- ☆26Updated 2 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 8 months ago
- ☆45Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated last month
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆22Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Plot microbiome time series in parallel☆26Updated last year
- scripts for microbiome analysis☆11Updated 11 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 11 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated last week
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆37Updated 2 years ago
- Prophage Activity Estimator☆26Updated last year
- Working with the outputs of sourmash in R☆27Updated last year
- Hydrocarbon biodegradation gene annotation☆15Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago