elizabethmcd / metabolisHMMLinks
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
☆17Updated 3 years ago
Alternatives and similar repositories for metabolisHMM
Users that are interested in metabolisHMM are comparing it to the libraries listed below
Sorting:
- ☆29Updated this week
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 5 months ago
- MAG Circularization Method☆32Updated 2 months ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Updated last year
- ☆22Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆22Updated 5 months ago
- ☆13Updated 8 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 8 years ago
- BEAV: Bacterial Element Annotation reVamped☆73Updated 4 months ago
- Discover and annotate the virome☆58Updated 3 months ago
- AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resis…☆46Updated 3 weeks ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆25Updated 7 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago
- scripts for microbiome analysis☆11Updated last year
- Bacterial GWAS analysis☆46Updated last week
- MAGScoT - a MAG scoring and refinement tool☆42Updated last year
- A functional profiler for metagenomes using FracMinHash☆20Updated 6 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆33Updated last month
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- ☆26Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 8 months ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Updated 3 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆41Updated last year