elizabethmcd / metabolisHMMLinks
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
☆18Updated 3 years ago
Alternatives and similar repositories for metabolisHMM
Users that are interested in metabolisHMM are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆20Updated 9 months ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆25Updated 6 months ago
- ☆26Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 5 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- ☆13Updated 7 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated last year
- scripts for microbiome analysis☆11Updated last year
- http://huttenhower.sph.harvard.edu/waafle☆19Updated 7 months ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆43Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 3 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- BEAV: Bacterial Element Annotation reVamped☆66Updated 9 months ago
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Discover and annotate the virome☆45Updated 3 weeks ago
- ☆16Updated 2 months ago
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- ☆46Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- ☆18Updated 3 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 3 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 11 months ago
- ☆18Updated 4 years ago