elizabethmcd / metabolisHMMLinks
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
☆18Updated 3 years ago
Alternatives and similar repositories for metabolisHMM
Users that are interested in metabolisHMM are comparing it to the libraries listed below
Sorting:
- MAG Circularization Method☆33Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆12Updated last year
- A functional profiler for metagenomes using FracMinHash☆16Updated 3 months ago
- Improvement of metagenome-assembled genomes☆52Updated 5 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 3 weeks ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆18Updated 7 months ago
- A Hierarchical Approach to Pangenomics Inference☆11Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Plot microbiome time series in parallel☆26Updated last year
- ☆25Updated last year
- scripts for microbiome analysis☆11Updated 10 months ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 10 months ago
- Prophage Activity Estimator☆26Updated last year
- ☆45Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 7 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- ☆22Updated 2 years ago
- ☆21Updated 4 months ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- Classify metagenomic contigs as eukaryotic or prokaryotic☆35Updated 2 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆24Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆29Updated 4 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- ☆15Updated 2 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Discover and annotate the virome☆42Updated last month
- Strain Resolution ON Graphs☆47Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated last month