☆52May 29, 2026Updated 3 months ago
Alternatives and similar repositories for microtrait
Users that are interested in microtrait are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Genome-informed, trait-based dynamic energy budget modeling of microbes with ML analysis of emergent strategies☆19Feb 18, 2026Updated 7 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆39Jul 12, 2022Updated 4 years ago
- ☆27Jun 20, 2023Updated 3 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Recovery of eukaryotic genomes using contrastive learning. A specialized metagenomic binning tool designed for recovering high-quality eu…☆26Updated this week
- Compare microbial co-occurrence networks based on the trans_network class of microeco package☆12Mar 25, 2026Updated 5 months ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Sep 7, 2026Updated last week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆46Feb 17, 2023Updated 3 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆234Mar 24, 2026Updated 5 months ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆19Aug 7, 2026Updated last month
- ☆57Updated this week
- Pipeline for identification of eukaryotic contigs in metagenomic assemblies☆14Mar 14, 2024Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15Oct 14, 2023Updated 2 years ago
- HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes☆69Updated this week
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆24May 14, 2023Updated 3 years ago
- ☆18Updated this week
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆34Nov 2, 2025Updated 10 months ago
- A wrapper to identify, bin, classify, and predict host-viral relationship for viruses☆92Dec 27, 2024Updated last year
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 4 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 2 months ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- MAGinator - Accurate SNV calling and profiling of MAGs☆28Mar 23, 2026Updated 5 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- A functional profiler for metagenomes using FracMinHash☆22Apr 20, 2026Updated 4 months ago
- MacSyFinder models allowing for a systematic search of anti-phage systems☆25May 14, 2026Updated 4 months ago
- Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species☆20Mar 17, 2021Updated 5 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Jun 10, 2026Updated 3 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆278Mar 20, 2025Updated last year
- A synthesis of bacterial and archaeal phenotypic trait data☆37Nov 9, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations☆15Nov 24, 2025Updated 9 months ago
- Fast and accurate Average Genome Size and 16S rRNA gene Average Copy Number computation in metagenomic data☆16Dec 20, 2024Updated last year
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Aug 28, 2026Updated 3 weeks ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆30Jan 15, 2026Updated 8 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆119Sep 9, 2026Updated last week
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 9 months ago
- dada2 formatted nifH database☆13May 17, 2024Updated 2 years ago