ukaraoz / microtrait
☆27Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for microtrait
- Plot microbiome time series in parallel☆24Updated last year
- Working with the outputs of sourmash in R☆25Updated last year
- ☆50Updated 3 weeks ago
- ☆20Updated last year
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 weeks ago
- functions for analyzing phyloseq data☆26Updated 3 months ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆14Updated last year
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆9Updated 3 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆31Updated 4 years ago
- ☆45Updated 7 months ago
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Tools for extracting individual genomes from metagenomes☆17Updated 11 months ago
- Speedy versions of phyloseq functions☆46Updated 7 months ago
- dada2 formatted nifH database☆11Updated 6 months ago
- A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data☆58Updated 2 years ago
- Improvement of metagenome-assembled genomes☆49Updated 4 years ago
- ☆40Updated 3 months ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆29Updated 2 years ago
- MaAsLin3: Microbiome Multivariate Association with Linear Models☆14Updated this week
- R package for microbial pangenomics☆21Updated 2 years ago
- MAG Circularization Method☆33Updated 2 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated 2 months ago
- 16S taxonomy assignment using an ecosystem-specific database.☆15Updated last year
- MicrobeCensus estimates the average genome size of microbial communities from metagenomic data☆43Updated 4 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆22Updated 4 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆49Updated this week
- BEAV: Bacterial Element Annotation reVamped☆59Updated 3 weeks ago
- Ley Lab MetaGenome Profiler DataBase generator☆47Updated 2 years ago