ukaraoz / microtrait
☆29Updated 10 months ago
Alternatives and similar repositories for microtrait:
Users that are interested in microtrait are comparing it to the libraries listed below
- ☆51Updated this week
- Plot microbiome time series in parallel☆24Updated last year
- ☆20Updated last year
- functions for analyzing phyloseq data☆26Updated last week
- ☆17Updated 2 years ago
- ☆47Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆48Updated 2 years ago
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 2 months ago
- Working with the outputs of sourmash in R☆26Updated last year
- dada2 formatted nifH database☆11Updated 8 months ago
- Improvement of metagenome-assembled genomes☆50Updated 4 years ago
- This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.☆31Updated 2 years ago
- ☆40Updated 5 months ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆19Updated 2 years ago
- Amplicon sequence processing workflow using QIIME 2 and Snakemake☆45Updated this week
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools☆30Updated this week
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆53Updated 4 months ago
- ☆14Updated this week
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆46Updated 2 years ago
- R package for microbial pangenomics☆21Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆51Updated last month
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- ☆15Updated last year
- Dissimilarity Overlap Curve analysis☆11Updated 2 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- An R package for removing contamination from metabarcoding (e.g., microbiome) datasets post-sequencing☆14Updated last year
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆63Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆53Updated last week
- Speedy versions of phyloseq functions☆46Updated 8 months ago