Alternatives and similar repositories for rust-wfa

Users that are interested in rust-wfa are comparing it to the libraries listed below

• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 11 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated this week
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆92Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆54Updated 2 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 7 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 4 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆38Updated 3 months ago
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆25Updated 3 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 8 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆56Updated 2 weeks ago
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 6 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆31Updated 2 years ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• RagnarGrootKoerkamp / sassy
  Fast approximate string searching
  ☆60Updated 2 months ago
• COMBINE-lab / pufferfish2
  ☆15Updated last year
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆84Updated last week
• Daniel-Liu-c0deb0t / ANTISEQUENCE
  Rust library for processing sequencing reads.
  ☆25Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆104Updated last week
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated 3 weeks ago