Rust implementation of the wavefront alignment algorithm
☆14Jul 4, 2022Updated 4 years ago
Alternatives and similar repositories for rust-wfa
Users that are interested in rust-wfa are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Shared k-mer content between two genomes☆19Jun 21, 2023Updated 3 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- A pairwise sequence aligner written in Rust☆152May 22, 2026Updated 4 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A Similarity-Guided Alignment Algorithm☆31Feb 7, 2026Updated 8 months ago
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 4 years ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14May 29, 2026Updated 4 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 5 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Rust bindings to minimap2 library☆114Sep 14, 2026Updated 3 weeks ago
- An aDNA aware short-read mapper☆22Apr 22, 2026Updated 5 months ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Nov 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆142Feb 14, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated 2 weeks ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 9 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 5 months ago
- Benchmarking pairwise aligners☆37Aug 26, 2026Updated last month
- A binary serialization format for sparse, labeled 2D numeric datasets☆12Sep 29, 2015Updated 11 years ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- A data manipulation tool for parquet, csv, and json data.☆43Mar 7, 2025Updated last year
- Iterate over minimizers of a DNA sequence☆33Jul 12, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆15Nov 30, 2023Updated 2 years ago
- ☆15Jun 29, 2021Updated 5 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- Hardware go brrr bounded context suffix array construction algorithm☆20Nov 1, 2023Updated 2 years ago
- my personal blog by astro☆25Mar 26, 2025Updated last year
- ☆15May 3, 2023Updated 3 years ago
- sfasta☆35Feb 25, 2026Updated 7 months ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆374Aug 17, 2026Updated last month
- ☆21Feb 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TELOmere SEARCH in Long sequencing Reads☆15Dec 26, 2025Updated 9 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- Kmer Analysis of Pileups for Genotyping☆43Jul 16, 2026Updated 2 months ago
- crussmap is a faster tool to convert genome coordinates between difference reference assemblies.☆23May 4, 2023Updated 3 years ago
- Fast FASTX parsing and k-mer methods in Rust☆214Sep 14, 2026Updated 3 weeks ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- ☆102Apr 22, 2024Updated 2 years ago