ostnam / rust-wfaLinks
☆12Updated 3 years ago
Alternatives and similar repositories for rust-wfa
Users that are interested in rust-wfa are comparing it to the libraries listed below
Sorting:
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 11 months ago
- bioinformatics toolkit in rust☆92Updated 2 weeks ago
- an API for intersections of genomic data☆74Updated last week
- Command line utility for working with next-generation sequencing files.☆36Updated 3 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Rust bindings to minimap2 library☆100Updated this week
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Rust implmentation of VCF parser☆25Updated 3 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Alignment-based gene expression quantification☆28Updated last month
- A FASTA/FASTQ format parser library☆20Updated last year
- ntHash implementation in Rust☆36Updated last year
- A high-performance BigWig and BigBed library in Rust☆103Updated 4 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- ☆50Updated 3 years ago
- Benchmarking pairwise aligners☆36Updated 8 months ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆31Updated 2 years ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- expressions on VCFs☆85Updated 5 months ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 2 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- ☆22Updated 2 months ago
- Fast and exact gap-affine partial order alignment☆54Updated 3 weeks ago
- Creating alignment plots from bam files☆65Updated this week
- Rust wrapper for the next generation (still currently in C++)☆28Updated 2 months ago
- implicit pangenome graph☆71Updated last week
- Bit-packed and well-typed biological sequences☆37Updated last week
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- ☆15Updated last year