ostnam / rust-wfa

Related projects ⓘ

Alternatives and complementary repositories for rust-wfa

• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆66Updated 3 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 2 weeks ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆26Updated 5 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆34Updated last week
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆40Updated 2 weeks ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 8 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆78Updated 6 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 4 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆26Updated 4 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆44Updated 3 months ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆34Updated 4 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆24Updated last week
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 4 years ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• jguhlin / sfasta
  sfasta
  ☆34Updated 3 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 5 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆20Updated this week
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆15Updated 5 months ago
• jeff-k / bio-seq
  Bit packed and well-typed biological sequences
  ☆21Updated 2 weeks ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆51Updated 3 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆16Updated this week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆13Updated 3 years ago
• alejandrogzi / gtfsort
  a lexicographically-based GTF/GFF sorter
  ☆28Updated 3 months ago
• cschin / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆12Updated this week
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated 2 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆42Updated this week