Alternatives and similar repositories for rust-wfa:

Users that are interested in rust-wfa are comparing it to the libraries listed below

• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 2 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆41Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 10 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆33Updated 2 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 6 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆86Updated 8 months ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated last week
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆25Updated last week
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated 7 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated 6 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆58Updated 4 months ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies.
  ☆15Updated 3 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆35Updated 6 months ago
• COMBINE-lab / piscem
  Rust wrapper for the next generation (still currently in C++)
  ☆22Updated this week
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆73Updated last year
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆56Updated this week
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• jguhlin / sfasta
  sfasta
  ☆35Updated 3 weeks ago
• jeff-k / bio-seq
  Bit packed and well-typed biological sequences
  ☆26Updated last week
• 10XGenomics / scan-rs
  Single-cell analysis methods in Rust
  ☆19Updated last month
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆49Updated 4 months ago
• natir / biotest
  Generate random test data for bioinformatics
  ☆25Updated 7 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• baku4 / sigalign
  A Similarity-Guided Alignment Algorithm
  ☆26Updated 4 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 9 months ago
• wdecoster / kyber
  ☆19Updated 2 weeks ago
• algbio / ggcat
  Compacted and colored de Bruijn graph construction and querying
  ☆79Updated this week
• brentp / vcfexpress
  expressions on VCFs
  ☆66Updated 3 months ago
• brentp / spacepile
  convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.
  ☆14Updated last year