twlab / methylGrapherLinks
Methylation analysis pipeline for genome graph
☆14Updated 8 months ago
Alternatives and similar repositories for methylGrapher
Users that are interested in methylGrapher are comparing it to the libraries listed below
Sorting:
- ☆16Updated 2 years ago
- ☆19Updated last year
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- TD2☆31Updated 3 weeks ago
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Updated last year
- A Hi-C scaffolding method☆22Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Identification of conserved non-coding sequences in plants☆32Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- Invertory of TE-gene isoforms☆14Updated 2 years ago
- ☆22Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆23Updated 2 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- ☆31Updated 6 years ago
- Genome Assembly 102☆17Updated 9 months ago
- ☆38Updated last month
- Genotyping of copy number sensitive allele-specific haplotypes☆27Updated 3 months ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Updated 3 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- SINE annotation tool for plant genomes☆18Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Updated 9 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies