Alternatives and similar repositories for methylGrapher:

Users that are interested in methylGrapher are comparing it to the libraries listed below

• uio-bmi / graph_peak_caller
  ChIP-seq peak caller for reads mapped to a graph-based reference genome
  ☆21Updated 7 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆17Updated 4 months ago
• hitbc / gcSV
  ☆16Updated last month
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆33Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆21Updated last month
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆26Updated 3 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆16Updated 11 months ago
• GeneDx / pgr-tk-notebooks
  Jupyter Notebooks Using PGR-TK for various human pangenome analysis tasks
  ☆15Updated 2 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆22Updated 3 months ago
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆22Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆9Updated last year
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆14Updated 6 months ago
• davidebolo1993 / cosigt
  ☆16Updated 2 weeks ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆12Updated 8 months ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 3 months ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• KolmogorovLab / minda
  ☆14Updated 2 weeks ago
• makovalab-psu / T2T_primate_XY
  ☆13Updated 9 months ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 7 months ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆22Updated 2 years ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆17Updated last week
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆31Updated 6 years ago