Alternatives and similar repositories for methylGrapher

Users that are interested in methylGrapher are comparing it to the libraries listed below

• human-pangenomics / hprc-tutorials
  ☆19Updated last year
• JBerthelier / ParasiTE
  Invertory of TE-gene isoforms
  ☆13Updated 2 years ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆35Updated this week
• noecochetel / North_American_Vitis_Pangenome
  Construct and Analyze the North American Vitis pangenome
  ☆29Updated 5 months ago
• hitbc / gcSV
  ☆21Updated 2 weeks ago
• Markusjsommer / TD2
  TD2
  ☆31Updated 2 weeks ago
• GeneDx / pgr-tk-notebooks
  ☆16Updated 2 years ago
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆35Updated 3 years ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• Walfred-MA / Ctyper
  Genotyping of copy number sensitive allele-specific haplotypes
  ☆27Updated 2 months ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 2 weeks ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆12Updated 4 years ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• logsdon-lab / CenMAP
  Centromere mapping and annotation pipeline
  ☆18Updated 2 weeks ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• ChenHuaLab / CEGA
  Inferring natural selection by comparative population genomic analysis across species
  ☆25Updated 2 years ago
• vgteam / giraffe-sv-paper
  ☆44Updated last year
• maxfieldk / TE-Seq
  Snakemake pipeline to analyze transposable element 'omics data.
  ☆30Updated last week
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated this week
• maickrau / ribotin
  ☆38Updated 3 weeks ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• legumeinfo / pandagma
  Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.
  ☆20Updated 3 weeks ago
• njdbickhart / GoatAssemblyScripts
  A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly
  ☆11Updated 8 years ago
• idanefroni / Conservatory
  Identification of conserved non-coding sequences in plants
  ☆31Updated 3 months ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• tobiaszehnder / IPP
  Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence
  ☆23Updated last month
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆16Updated 2 years ago