gymrek-lab / EnsembleTRLinks
Tools for merging Tandem Repeat VCF files
☆35Updated 5 months ago
Alternatives and similar repositories for EnsembleTR
Users that are interested in EnsembleTR are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated 6 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- Structural variant (SV) analysis tools☆38Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 7 months ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- Haplotype and population structure inference using neural networks.☆27Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 weeks ago
- Functions to compare a SV call sets against a truth set.☆30Updated 4 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Repository for pipeline code☆26Updated last year
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 2 months ago
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Updated 3 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- ☆35Updated 4 years ago
- Easy genomic regions for short-read variant calling☆44Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- A tool to extract LOH blocks from VCF, BAM and FASTA data☆25Updated last year
- ☆18Updated last year
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆15Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year