gymrek-lab / EnsembleTRLinks
Tools for merging Tandem Repeat VCF files
☆33Updated 4 months ago
Alternatives and similar repositories for EnsembleTR
Users that are interested in EnsembleTR are comparing it to the libraries listed below
Sorting:
- Population-wide Deletion Calling☆35Updated 5 months ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆32Updated 4 months ago
- A python wrapper around SURVIVOR☆20Updated last year
- Immuological gene typing and annotation for genome assembly☆38Updated 6 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- Easy genomic regions for short-read variant calling☆43Updated last week
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Haplotype and population structure inference using neural networks.☆27Updated 9 months ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆21Updated last year
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆31Updated 3 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆29Updated 9 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Distribution of TEs and their relationship to genes in host genome☆23Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 5 months ago
- SparsePainter: fast, accurate and fine-scale chromosome painting software based on PBWT and HashMap☆17Updated last week
- SV genotyping with long reads☆39Updated 2 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Repository for pipeline code☆26Updated last year
- Reducing reference bias using multiple population reference genomes☆33Updated last year