Alternatives and similar repositories for GRAFIMO

Users that are interested in GRAFIMO are comparing it to the libraries listed below

• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 7 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆29Updated 2 months ago
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated this week
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆39Updated last year
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• PacificBiosciences / pbfusion
  ☆23Updated 5 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated 3 weeks ago
• jts / mbtools
  ☆14Updated 2 years ago
• WGLab / LongGF
  A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing
  ☆21Updated 4 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated last year
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• at-cg / minichain
  Long-read aligner to pangenome graphs
  ☆27Updated last year
• CuiMiao-HIT / miniSNV
  ☆19Updated 11 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• ydLiu-HIT / deSALT
  deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
  ☆44Updated 3 years ago
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆24Updated last month
• gjun / muCNV
  ☆20Updated last year
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last week
• VGP / vgp-tools
  ☆28Updated 6 months ago
• olga24912 / SGTK
  Example of SGTK application for E.coli dataset:
  ☆32Updated 5 years ago
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆22Updated this week
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 3 months ago