pinellolab / GRAFIMOLinks
GRAph-based Finding of Individual Motif Occurrences
☆31Updated 10 months ago
Alternatives and similar repositories for GRAFIMO
Users that are interested in GRAFIMO are comparing it to the libraries listed below
Sorting:
- Construct a Physical Map from Linked Reads☆18Updated last year
- Convert HAL to VG☆22Updated 11 months ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- GBWT-based handle graph☆31Updated 2 weeks ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 9 months ago
- ☆26Updated 3 years ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆51Updated last month
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 7 months ago
- ☆31Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆43Updated last year
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆18Updated 7 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- ☆14Updated last year
- ☆59Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 weeks ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Toolkit for genome-wide analysis of tandem repeats☆58Updated 4 months ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year
- A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.☆18Updated last month
- ☆20Updated 3 years ago
- ☆41Updated 2 months ago
- k-mer similarity analysis pipeline☆21Updated last week
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 7 years ago