Alternatives and similar repositories for GRAFIMO

Users that are interested in GRAFIMO are comparing it to the libraries listed below

• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated last year
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 7 months ago
• ComparativeGenomicsToolkit / taffy
  This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files
  ☆28Updated last month
• PacificBiosciences / pbfusion
  ☆23Updated 4 months ago
• vicsanga / Postre
  POSTRE: Prediction Of STRuctural variant Effects
  ☆28Updated 7 months ago
• yanboANU / Kmer2SNP
  ☆26Updated 4 years ago
• lh3 / gwfa
  Proof-of-concept implementation of GWFA for sequence-to-graph alignment
  ☆55Updated last year
• marbl / T2T-Browser
  Genome browser hub for the T2T genomes and resources
  ☆23Updated 2 weeks ago
• jts / mbtools
  ☆14Updated 2 years ago
• CuiMiao-HIT / miniSNV
  ☆19Updated 10 months ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆42Updated last year
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆45Updated last month
• gymrek-lab / TRTools
  Toolkit for genome-wide analysis of tandem repeats
  ☆58Updated 2 weeks ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 4 months ago
• mcfrith / dnarrange
  ☆16Updated 9 months ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆23Updated 3 months ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated last year
• fawaz-dabbaghieh / bubble_gun
  ☆40Updated 2 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆45Updated 2 months ago
• jmonlong / parakit
  Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.
  ☆11Updated last month
• VGP / vgp-tools
  ☆28Updated 6 months ago
• UCSC-nanopore-cgl / margin
  ☆33Updated 2 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 5 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆38Updated last year
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 6 years ago