Teichlab / gene2probe
Pipeline for designing custom probes against human genes
☆11Updated last week
Related projects: ⓘ
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 3 months ago
- .h5mu files interface for Seurat☆24Updated 9 months ago
- ☆37Updated this week
- Paired Insertion Counting for snATAC-seq data☆15Updated 3 weeks ago
- ☆20Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆17Updated 8 months ago
- ☆25Updated 3 weeks ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 4 months ago
- Tools for analyzing Slide-seq data☆31Updated 10 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆10Updated last year
- ☆29Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆24Updated last year
- simplified cellranger for long-read data☆15Updated 2 months ago
- ☆38Updated last month
- ☆33Updated 5 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆14Updated last year
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆14Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆36Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆29Updated 2 years ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆12Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆29Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated 8 months ago
- Cellular Genetics Informatics Notebooks☆20Updated 2 years ago
- ☆28Updated 4 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- Toolkit for single-cell copy number analysis☆16Updated 4 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆14Updated 6 months ago
- An R/Bioconductor package to identify higher-order molecular phenotypes☆12Updated 8 months ago