yyoshiaki / VIRTUS2
A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
☆18Updated last year
Alternatives and similar repositories for VIRTUS2:
Users that are interested in VIRTUS2 are comparing it to the libraries listed below
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- RNAseq pipeline based on snakemake☆22Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated last year
- Motif manipulation functions for R.☆26Updated 2 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- Merge fastq files split over lanes☆20Updated 6 years ago
- Versatile FASTA/FASTQ demultiplexer.☆32Updated 8 months ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆34Updated 2 years ago
- ☆20Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated 11 months ago
- ☆21Updated 8 months ago
- Snakemake pipeline for running MAJIQ☆19Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆21Updated last year
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆38Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- ☆23Updated 3 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆16Updated 3 months ago
- RNA editing tests☆16Updated 4 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.☆17Updated last year
- ☆27Updated last year
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆18Updated 10 months ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 4 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆34Updated 6 months ago
- simplified cellranger for long-read data☆17Updated 4 months ago
- Docker container for genomics analyses in R.☆24Updated 9 months ago
- ☆25Updated last month
- A program for the analysis of single cell nanopore long read data☆15Updated 6 months ago