A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.
☆19Jul 24, 2023Updated 2 years ago
Alternatives and similar repositories for VIRTUS2
Users that are interested in VIRTUS2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Viral Identification and Discovery - A viral characterization pipeline built in Nextflow.☆11May 19, 2020Updated 5 years ago
- VirID: An integrated platform for the discovery and characterization of RNA Viruses☆23Jan 8, 2026Updated 3 months ago
- A command-line interface for Sentieon pipelines☆14Updated this week
- ☆28Aug 21, 2024Updated last year
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆36Mar 13, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Pipeline for designing custom probes against human genes☆22Jan 30, 2026Updated 3 months ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- R package for easy access to various ecological trait data☆27Oct 26, 2022Updated 3 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆34Jul 29, 2024Updated last year
- detecting spatial patterns of allele-specific expression☆11May 22, 2024Updated last year
- eQTLHap: a comprehensive eQTL analysis tool.☆11Apr 15, 2021Updated 5 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆11Oct 31, 2023Updated 2 years ago
- Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)☆34Oct 6, 2022Updated 3 years ago
- Cloud-based scalable and efficient single-cell genomics workflows☆68Apr 17, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- shotgun pipeline☆12Apr 3, 2019Updated 7 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- single cell Gene co-Expression Network Analysis☆10Sep 6, 2022Updated 3 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last month
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 11 months ago
- Common Factor Integration & Transfer learning (cFIT) for single cell RNA-seq data☆12Jul 6, 2021Updated 4 years ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆29Jun 4, 2024Updated last year
- A collection of CSV/TSV Utilities☆13Jun 2, 2020Updated 5 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 8 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- ☆13Dec 26, 2025Updated 4 months ago
- Easy to use encryption tools for R☆19Jan 31, 2025Updated last year
- Taxonomic classification of viruses at Order and Family level☆21Mar 1, 2023Updated 3 years ago
- ☆14Jan 23, 2026Updated 3 months ago
- De novo clustering of long transcript reads into genes☆22Dec 15, 2025Updated 4 months ago
- Unbiased single-cell transcriptomic data cell type identification☆15May 7, 2024Updated last year
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Vanilla Components - Ergonomic and Widely Reusable☆23Sep 3, 2016Updated 9 years ago
- Workflow: Convert CONTROL-freec output to GISTIC2☆10Apr 20, 2021Updated 5 years ago
- bisulfite sequencing pipeline from fastq to methylation reports☆13Apr 10, 2026Updated 3 weeks ago
- pygor3 repository☆10Nov 20, 2025Updated 5 months ago
- ☆11May 6, 2021Updated 4 years ago
- Spreadsheet template files for 9x9 and 10x10 tube storage boxes for freezing biological samples☆12Apr 18, 2025Updated last year
- RNA-seq data amalgamation for a large-scale evolutionary transcriptomics☆12Apr 15, 2026Updated 2 weeks ago