mckellardw / STRS
Suite of analysis tools for spatial total RNA-sequencing
☆11Updated last year
Alternatives and similar repositories for STRS:
Users that are interested in STRS are comparing it to the libraries listed below
- ☆16Updated last year
- Pipeline for designing custom probes against human genes☆15Updated 3 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆13Updated 7 months ago
- ☆20Updated last year
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆23Updated 2 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 8 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆45Updated 6 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆15Updated 9 months ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆17Updated last year
- ☆12Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 weeks ago
- ☆17Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆14Updated 3 years ago
- ☆24Updated last year
- ☆11Updated last year
- cell type specific, trait-associated gene regulation☆19Updated this week
- ☆12Updated 3 years ago
- R Package for phasing of single cell Strand-seq data☆10Updated last month
- ☆31Updated 9 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆15Updated last year