mckellardw / STRS
Suite of analysis tools for spatial total RNA-sequencing
☆12Updated last year
Alternatives and similar repositories for STRS
Users that are interested in STRS are comparing it to the libraries listed below
Sorting:
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆17Updated 2 years ago
- ☆23Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆20Updated last year
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated 2 months ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated last month
- ☆33Updated last year
- interactive visualization of single-cell transcriptomes☆11Updated last year
- R package of CSOmap(developing☆14Updated 3 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated 2 years ago
- ☆25Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆15Updated 3 years ago
- Toolkit for single-cell copy number analysis☆23Updated 6 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆11Updated last year
- Analyzing chromatin accessibility data in R☆18Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆14Updated 5 months ago
- ☆49Updated 9 months ago
- ☆17Updated 4 years ago
- Pipeline for designing custom probes against human genes☆16Updated 6 months ago
- Tools for detecting alternative splicing events and genotype in single-cell gene expression data.☆14Updated last year
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆10Updated this week
- ☆30Updated 3 months ago
- python API to the CoGAPS NMF package☆19Updated last year