Alternatives and similar repositories for STRS:

Users that are interested in STRS are comparing it to the libraries listed below

• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 2 years ago
• YiPeng-Gao / scDaPars
  Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)
  ☆15Updated 3 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆17Updated 3 weeks ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆16Updated 11 months ago
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆22Updated 2 weeks ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 3 years ago
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• UMCUGenetics / primary-met-wgs-comparison
  Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.
  ☆15Updated last year
• wenweixiong / MARVEL
  ☆48Updated 8 months ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆14Updated 4 months ago
• MarioniLab / CELLOseq
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆8Updated 10 months ago
• asoltis / MutEnricher
  Somatic coding and non-coding mutation enrichment analysis for tumor WGS data
  ☆10Updated 3 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆19Updated 2 months ago
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year
• landau-lab / ONT-sc-splice
  Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
  ☆14Updated last year
• UPSUTER / GEMLI
  ☆30Updated 2 months ago
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 5 months ago
• gxiaolab / scAllele
  ☆33Updated 11 months ago
• wanqingshao / TE_expression_in_scRNAseq
  ☆17Updated 4 years ago
• mardzix / bcd_nano_CUTnTag
  ☆11Updated last year
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• huyustats / SCATS
  A statistical tool to detect differential alternative splicing events using single-cell RNA-seq
  ☆22Updated last year
• lijxug / CSOmapR
  R package of CSOmap(developing
  ☆14Updated 3 years ago
• mskilab-org / nf-jabba
  ☆13Updated 9 months ago