mckellardw / STRSLinks
Suite of analysis tools for spatial total RNA-sequencing
☆12Updated 2 years ago
Alternatives and similar repositories for STRS
Users that are interested in STRS are comparing it to the libraries listed below
Sorting:
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- ☆17Updated 2 years ago
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 4 years ago
- ☆12Updated last year
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆20Updated last week
- A toolkit for analyzing architectural stripes☆20Updated 8 months ago
- ☆11Updated 2 years ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆14Updated 3 weeks ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- ☆14Updated 2 months ago
- Systematic analyses of intronic polyadenylation from standard RNAseq data☆13Updated 11 months ago
- ☆18Updated 4 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 4 years ago
- ☆20Updated last year
- ☆12Updated 4 years ago
- Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel☆15Updated 2 years ago
- Pipeline for designing custom probes against human genes☆17Updated 9 months ago
- python API to the CoGAPS NMF package☆19Updated 3 months ago
- ☆25Updated last year
- ☆10Updated 3 years ago
- ☆19Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated 2 years ago
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆12Updated last week
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Snakemake pipeline for plate scATAC-seq processing☆26Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆34Updated 3 years ago