Suite of analysis tools for spatial total RNA-sequencing
☆12Aug 10, 2023Updated 2 years ago
Alternatives and similar repositories for STRS
Users that are interested in STRS are comparing it to the libraries listed below
Sorting:
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- ☆49Updated this week
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Single Cell RNA PolyA Site Discovery☆11Jan 28, 2026Updated last month
- ☆12May 8, 2025Updated 9 months ago
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"☆11Sep 30, 2019Updated 6 years ago
- ☆13Mar 29, 2024Updated last year
- ☆12Nov 20, 2023Updated 2 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Jan 14, 2024Updated 2 years ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆14May 17, 2025Updated 9 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- ☆14Oct 17, 2024Updated last year
- ☆16Aug 8, 2025Updated 6 months ago
- Example scripts for analyzing CUT&RUN datasets☆13Oct 3, 2018Updated 7 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Jun 12, 2024Updated last year
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 8 months ago
- ☆12Mar 22, 2023Updated 2 years ago
- Clair3-Trio: variant calling in trio using Nanopore long-reads☆16Apr 18, 2024Updated last year
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated last week
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jan 8, 2026Updated last month
- glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…☆12Jan 16, 2026Updated last month
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"☆17Dec 1, 2024Updated last year
- Comprehensive analysis of small RNA sequencing data☆36May 14, 2025Updated 9 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated last year
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- ☆20May 1, 2023Updated 2 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- ☆19Sep 15, 2020Updated 5 years ago
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆16Jun 17, 2025Updated 8 months ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆13Jul 2, 2022Updated 3 years ago
- A toolkit for analyzing architectural stripes☆20Dec 1, 2024Updated last year
- Pipeline for designing custom probes against human genes☆21Jan 30, 2026Updated last month
- Data processing and analysis scripts for our spatial profiling of embryos using seqFISH☆16Feb 10, 2023Updated 3 years ago