Alternatives and similar repositories for STRS

Users that are interested in STRS are comparing it to the libraries listed below

• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆14Updated 3 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 2 months ago
• XiaoTaoWang / StripeCaller
  A toolkit for analyzing architectural stripes
  ☆20Updated 9 months ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• dekkerlab / matrix_paper
  Scripts and notebooks used in Akgol Oksuz et al. paper
  ☆11Updated 4 years ago
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• wanqingshao / TE_expression_in_scRNAseq
  ☆18Updated 4 years ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆20Updated last month
• Dingpw / Endothelial-Cell-Heterogeneity-and-Microglia-Regulons-Revealed-by-A-Pig-Cell-Landscape-at-Single-cel
  ☆15Updated 2 years ago
• ZhaozzReal / IPAFinder
  Systematic analyses of intronic polyadenylation from standard RNAseq data
  ☆13Updated last year
• mardzix / bcd_nano_CUTnTag
  ☆12Updated last year
• epigen / scifiRNA-seq
  ☆12Updated 4 years ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆17Updated last year
• veltenlab / mitoClone
  ☆12Updated 4 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• PoolLab / ReferenceEnhancer
  ☆20Updated 2 years ago
• FertigLab / pycogaps
  python API to the CoGAPS NMF package
  ☆19Updated 3 months ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆25Updated 3 years ago
• RebuffetLucas / Meta_NK_Project
  ☆10Updated last month
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆17Updated 5 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 11 months ago
• vincenthahaut / FLASH-Seq
  ☆10Updated 3 years ago
• navinlabcode / ACT_paper
  Scripts used for the ACT paper
  ☆12Updated 4 years ago
• oaxiom / glbase3
  glbase is a flexible and multifunctional toolkit allowing the user to perform many common analyses on ChIP-seq, microarray and RNA-seq da…
  ☆12Updated last week
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆14Updated last month
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 5 years ago
• buenrostrolab / dscATAC_analysis_code
  Analysis repository for "Droplet-based combinatorial indexing for massive scale single-cell epigenomics"
  ☆11Updated 5 years ago
• ChongJenniferZhang / CLCA_WGS
  ☆25Updated last year
• ConesaLab / acorde
  Isoform co-usage networks from single-cell RNA-seq data
  ☆16Updated last year