☆49Jun 3, 2026Updated 2 weeks ago
Alternatives and similar repositories for spacemake
Users that are interested in spacemake are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab☆113Jul 4, 2025Updated 11 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆99Feb 11, 2026Updated 4 months ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 2 years ago
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆19Jun 9, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated 11 months ago
- Single-Cell Spatial Explorer☆15Dec 14, 2023Updated 2 years ago
- ☆22Aug 2, 2023Updated 2 years ago
- ☆54Mar 7, 2023Updated 3 years ago
- Spatiotemporal modeling of spatial transcriptomics☆343Feb 25, 2026Updated 3 months ago
- CellRank: dynamics from multi-view single-cell data☆454Jun 9, 2026Updated last week
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆27Nov 21, 2022Updated 3 years ago
- A performant scientific image visualization system.☆36Jun 4, 2026Updated 2 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatial analysis toolkit for single cell multiplexed tissue data☆30Sep 2, 2024Updated last year
- ☆23Mar 29, 2023Updated 3 years ago
- Repository for edgePython which is a Python implementation of the Bioconductor edgeR package for differential analysis of genomics count …☆81Updated this week
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 7 months ago
- ☆12Jul 15, 2022Updated 3 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- ☆18Oct 22, 2024Updated last year
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆133Nov 17, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Aug 17, 2023Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Jun 11, 2021Updated 5 years ago
- Single Cell Analysis of Five'Ends☆52Mar 19, 2024Updated 2 years ago
- Pipeline for designing custom probes against human genes☆23Jan 30, 2026Updated 4 months ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Updated this week
- ☆29Apr 26, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Finding the causality in biological pathways☆14Jul 12, 2023Updated 2 years ago
- Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).☆13Jan 12, 2024Updated 2 years ago
- R API and htmlwidget for Vitessce☆45Aug 13, 2025Updated 10 months ago
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Aug 12, 2022Updated 3 years ago
- Spatial alignment of single cell transcriptomic data.☆368Jul 1, 2025Updated 11 months ago
- A variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics☆13Mar 11, 2024Updated 2 years ago