romain-lopez / DestVI-reproducibility
Reproducing the experiments of the DestVI paper
☆18Updated 3 years ago
Alternatives and similar repositories for DestVI-reproducibility:
Users that are interested in DestVI-reproducibility are comparing it to the libraries listed below
- Spatial direct messaging detected by bivariate Moran☆25Updated 2 months ago
- ☆45Updated last week
- domain adaptation of spatial and single-cell transcriptome☆26Updated 6 months ago
- Spatial Cellular Estimator for Tumors☆51Updated 2 weeks ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆33Updated 8 months ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆38Updated 2 years ago
- ☆42Updated 2 weeks ago
- ☆31Updated 2 months ago
- ☆21Updated 2 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆23Updated 6 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆110Updated 2 weeks ago
- Bayesian Analytics for Spatial Segmentation☆25Updated 5 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆31Updated last month
- ☆32Updated last year
- The benchmarking of spatial transcriptomics deconvolution methods☆30Updated 2 years ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆33Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 4 months ago
- ☆19Updated 3 weeks ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- ☆38Updated 2 years ago
- End-to-end analysis of spatial multi-omics data☆55Updated this week
- Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets☆30Updated last year
- Predict RNA velocity through deep learning☆66Updated last year
- ☆50Updated 9 months ago
- an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…☆23Updated last week
- Single cell omics biology annotations☆50Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 3 weeks ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago