Reproducing the experiments of the DestVI paper
☆24Feb 9, 2022Updated 4 years ago
Alternatives and similar repositories for DestVI-reproducibility
Users that are interested in DestVI-reproducibility are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆13Dec 16, 2021Updated 4 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆19Dec 5, 2024Updated last year
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago
- Cross-modal Identification of Tertiary Lymphoid Structures☆31Jun 19, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence☆40Aug 11, 2022Updated 3 years ago
- ☆36Jun 15, 2026Updated last month
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆15Nov 25, 2025Updated 7 months ago
- Public repo for STEP: Spatial Transcriptomics Embedding Procedure☆18Nov 13, 2024Updated last year
- Volume-regularized NMF☆18Apr 14, 2022Updated 4 years ago
- Tools for generating single-cell gene expression data☆34Jun 20, 2025Updated last year
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- ☆13Jan 29, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Nov 2, 2018Updated 7 years ago
- ☆14Jul 1, 2025Updated last year
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆50Aug 18, 2025Updated 11 months ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated 2 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 5 months ago
- 该存储库,主要存放根据自己所掌握的NGS差异表达分析技术方法为主,具体的实验以及方案设计等将不会存放在此存储库。☆15May 19, 2020Updated 6 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated 9 months ago
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆450Jul 13, 2026Updated last week
- Nonnegative spatial factorization for multivariate count data☆66Jun 28, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- ☆13Oct 4, 2022Updated 3 years ago
- SingleCell: A Python/Cython Package for Processing Single-Cell RNA-Seq Data.☆11Jan 26, 2018Updated 8 years ago
- ☆16Sep 29, 2023Updated 2 years ago
- ☆11May 6, 2021Updated 5 years ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated last year
- Holds the code and data to reproduce the analyses of Danaher & Kim et a;, "Advances in mixed cell deconvolution enable quantification of …☆12Dec 8, 2021Updated 4 years ago
- scPRAM accurately predicts single-cell gene expression perturbation response based on attention mechanism☆18Oct 17, 2024Updated last year
- Notebooks used in scvi-tools tutorials☆64Jul 14, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Python implementation of the model described in our publication "A convolutional neural network for common-coordinate registration of h…☆25Oct 21, 2021Updated 4 years ago
- ☆12Nov 20, 2023Updated 2 years ago
- ☆12Mar 22, 2023Updated 3 years ago
- Reproducing the experiments in the paper☆11Dec 14, 2021Updated 4 years ago
- ☆17Oct 29, 2025Updated 8 months ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆45Sep 5, 2022Updated 3 years ago