constantAmateur / cellSignalAnalysisLinks
Identify major cellular signals in bulk transcriptomes
☆11Updated 3 years ago
Alternatives and similar repositories for cellSignalAnalysis
Users that are interested in cellSignalAnalysis are comparing it to the libraries listed below
Sorting:
- Mosaic single cell data integration using non-overlapping features☆37Updated 2 years ago
- Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"☆26Updated 7 years ago
- Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3☆43Updated 2 months ago
- ☆26Updated 9 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- ☆35Updated 5 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- ☆29Updated 2 years ago
- ADTnorm normalizes the cell surface protein measurement of CITE-seq data, facilitating across batches and across studies data integration…☆22Updated last month
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Updated 2 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Repository for scRNAseq study of human kidneys☆15Updated 6 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 4 months ago
- Single-cell Case Control Analysis☆51Updated 9 months ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last week
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆41Updated 7 months ago
- Calculate cluster similarity between clusters from different single cell datasets/batches/samples.☆23Updated 3 months ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆29Updated last week
- Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)☆15Updated last month
- ☆32Updated 6 months ago
- Single-cell Mutual Information-based Network Engineering Ranger☆20Updated this week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- TF analysis from epigenetic and Hi-C data☆17Updated 4 months ago