Alternatives and similar repositories for cellSignalAnalysis

Users that are interested in cellSignalAnalysis are comparing it to the libraries listed below

• constantAmateur / scKidneyTumors
  Code for "Single cell transcriptomes from human kidneys reveal the cellular identity of renal tumours"
  ☆26Updated 7 years ago
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 7 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆44Updated last month
• OscarGVelasco / ClusterFoldSimilarity
  Calculate cluster similarity between clusters from different single cell datasets/batches/samples.
  ☆24Updated 5 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆22Updated last year
• doraadong / TraSig
  Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data
  ☆25Updated 2 years ago
• kharchenkolab / cacoa
  Single-cell Case Control Analysis
  ☆52Updated last week
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 11 months ago
• potulabe / symphonypy
  Port of symphony algorithm of single-cell reference atlas mapping to Python
  ☆30Updated last week
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• parveendabas / GBMatlas
  ☆18Updated 3 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• kkdey / GSSG
  Gene Set + S2G strategy annotations analyzed for disease architecture
  ☆55Updated 2 years ago
• MagpiePKU / EpiTrace
  Cell age determination by scATAC-seq and bulk-ATAC-seq
  ☆32Updated last year
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆28Updated 3 years ago
• ati-lz / HCA_Benchmarking
  This repository contains HCA Benchmarking codes
  ☆26Updated 5 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆23Updated last month
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆29Updated 6 months ago
• jzhoulab / quasildr
  Quasilinear data representations for single-cell omics data analysis
  ☆43Updated 2 years ago
• MarioniLab / StabMap
  Mosaic single cell data integration using non-overlapping features
  ☆37Updated 3 years ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆45Updated 3 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated last month
• neurorestore / DE-analysis
  ☆39Updated 4 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆17Updated 6 years ago
• amcdavid / CellaRepertorium
  Methods for clustering and analyzing high-throughput single cell immune cell repertoires (RepSeq)
  ☆15Updated 3 months ago
• LKremer / scbs
  Python package with CLI for the analysis of single cell methylation data. Now known as MethSCAn: https://github.com/anders-biostat/MethSC…
  ☆12Updated last year
• xichensf / magical
  R and MATLAB scripts for MAGICAL
  ☆11Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 9 months ago
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆17Updated last year
• ludvigla / STUtility_web_site
  ☆15Updated 3 years ago