gNOMO2 allows integrated multi-omics analyses of microbiomes
☆15Aug 7, 2024Updated last year
Alternatives and similar repositories for gNOMO2
Users that are interested in gNOMO2 are comparing it to the libraries listed below
Sorting:
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 5 years ago
- A bacterial GWAS pipeline written in Nextflow that uses Pyseer; Part III Project for Systems Biology at the University of Cambridge☆21Jan 20, 2026Updated last month
- Repository for discussion lectures (MCBL121, Winter 2024), up until I decided that google slides was way easier.☆25Dec 17, 2024Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 2 months ago
- 16S pipeline using qiime2 created with snakemake☆12Jan 2, 2026Updated last month
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆25Jul 23, 2025Updated 7 months ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- Metabolic scanning and annotation of Metagenomes☆10Dec 18, 2025Updated 2 months ago
- Pan-genome Analysis☆12May 4, 2025Updated 9 months ago
- Snakemake template for building reusable and scalable machine learning pipelines with mikropml☆13Feb 26, 2025Updated last year
- Toolkit for preparing genomes for submission to NCBI☆29Sep 6, 2021Updated 4 years ago
- Suite of analysis tools for spatial total RNA-sequencing☆12Aug 10, 2023Updated 2 years ago
- codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, prophage, etc.) relative to the…☆13Jan 19, 2026Updated last month
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- ☆19Nov 11, 2024Updated last year
- ☆14Oct 29, 2024Updated last year
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Feb 26, 2020Updated 6 years ago
- Download assembly files from NCBI☆13May 9, 2023Updated 2 years ago
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆19Jan 8, 2026Updated last month
- reComBat package to correct batch effects☆13Jul 17, 2023Updated 2 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆19Dec 3, 2024Updated last year
- ☆16May 22, 2023Updated 2 years ago
- MAGScoT - a MAG scoring and refinement tool☆43Oct 10, 2024Updated last year
- Classify metagenomic contigs as eukaryotic or prokaryotic☆43Feb 17, 2023Updated 3 years ago
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Jul 26, 2024Updated last year
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆41Feb 20, 2026Updated last week
- Workflows for metagenomic sequence data processing and analysis.☆16Jul 30, 2019Updated 6 years ago
- Pipeline for designing custom probes against human genes☆21Jan 30, 2026Updated last month
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆103May 23, 2025Updated 9 months ago
- ☆50Jan 24, 2026Updated last month
- Bacterial GWAS analysis☆47Feb 17, 2026Updated last week
- MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data☆17Jul 15, 2025Updated 7 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Mar 13, 2025Updated 11 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Feb 5, 2026Updated 3 weeks ago
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆28Mar 4, 2024Updated last year
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago