muzafferarikan / gNOMO2Links
gNOMO2 allows integrated multi-omics analyses of microbiomes
☆15Updated last year
Alternatives and similar repositories for gNOMO2
Users that are interested in gNOMO2 are comparing it to the libraries listed below
Sorting:
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- Reproducible scripts and notebooks for 2019 paper on population genetics in metagenomes☆16Updated 5 years ago
- Accurate metagenomi/metatranscriptomic analysis pipeline☆23Updated 4 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- Bacterial GWAS analysis☆43Updated 2 months ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Updated 3 months ago
- scripts for microbiome analysis☆11Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated last week
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- A repo to reproduce the experiments in the YACHT manuscript☆11Updated last year
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆22Updated last year
- Hierarchical clustering of cgMLST☆11Updated last year
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- Discover and annotate the virome☆51Updated 3 weeks ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆23Updated last month
- ☆18Updated 3 years ago
- Quality control plotting for long reads☆10Updated last year
- KEGG Module Evaluation Tool☆31Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- This repository contains R code for building a heatmap and histogram with the output of FastANI☆18Updated 4 years ago
- HoCoRT - Remove specific organisms from sequencing reads☆17Updated 8 months ago
- ☆32Updated 8 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆14Updated 2 years ago
- Build a map of genes present across a set of microbial genomes☆18Updated this week