Alternatives and similar repositories for sma:

Users that are interested in sma are comparing it to the libraries listed below

• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆21Updated 11 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 3 months ago
• cantinilab / scPRINT-old1
  Single Cell Pretrained Regulatory network INference from Transcripts
  ☆11Updated 5 months ago
• Jiaxin-Fan / MuSiC2
  cell type deconvolution for multi-condition bulk RNA-seq data
  ☆23Updated 3 years ago
• loosolab / scanpro
  A modular tool for proportion analysis in single-cell sequencing data
  ☆18Updated last month
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• cole-trapnell-lab / Scribe
  Regulatory networks with Direct Information
  ☆16Updated 5 years ago
• bendemeo / shannonca
  Information-based dimensionality reduction
  ☆29Updated 2 months ago
• veltenlab / mitoClone
  ☆12Updated 3 years ago
• MarioniLab / oor_benchmark
  A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data
  ☆13Updated 4 months ago
• ZornLab / Single-cell-transcriptomics-reveals-a-signaling-roadmap-coordinating-endoderm-and-mesoderm-lineage
  Code and Data Availability for Single cell transcriptomics reveals a signaling roadmap coordinating endoderm and mesoderm lineage diversi…
  ☆9Updated 4 years ago
• Sun-lab / ideas
  Individual level Differential Expression Analysis for Single cells
  ☆23Updated 2 years ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆25Updated last year
• ChenWeiyan / LandSCENT
  Landscape Single Cell Entropy
  ☆19Updated 4 years ago
• JSB-UCLA / scReadSim
  A single cell sequencing read simulator.
  ☆27Updated 4 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆31Updated this week
• pachterlab / GFCP_2022
  RNA velocity validation
  ☆23Updated 2 years ago
• sdentro / copykat_pipeline
  ☆12Updated last year
• jaymahat / scGROseq
  scGRO-seq analyses codes
  ☆11Updated last year
• kostkalab / vaeda
  Vaeda method for computational doublet annotation
  ☆16Updated 8 months ago
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 4 years ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆13Updated last year
• jiang-junyao / CACIMAR
  cross-species analysis of cell identities, markers and regulations
  ☆12Updated 2 months ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆29Updated last month
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆15Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆22Updated 3 months ago
• wenweixiong / MARVEL
  ☆45Updated 7 months ago
• CostaLab / MOJITOO
  MOJITOO: a fast and universal method for integration of multimodal single cell data
  ☆10Updated 4 months ago