Alternatives and similar repositories for STalign

Users that are interested in STalign are comparing it to the libraries listed below

• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆94Updated last month
• dpeerlab / ENVI
  ☆50Updated 3 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆37Updated 5 months ago
• seqscope / ficture
  ☆37Updated 3 weeks ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆64Updated 9 months ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆130Updated 2 weeks ago
• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆30Updated 11 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆36Updated last year
• prabhakarlab / Banksy_py
  ☆58Updated 3 weeks ago
• CaiGroup / seqFISH-PLUS
  ☆52Updated 4 years ago
• ludvb / xfuse
  Super-resolved spatial transcriptomics by deep data fusion
  ☆74Updated 2 years ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆65Updated last year
• ElementoLab / utag
  ☆38Updated last year
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆82Updated last month
• yuqiyuqitan / SPACEc
  ☆47Updated 2 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆40Updated last month
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆59Updated 2 months ago
• shuxiaoc / maxfuse
  ☆55Updated last year
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆53Updated this week
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆29Updated 3 months ago
• Teichlab / bin2cell
  Join subcellular Visium HD bins into cells
  ☆115Updated 3 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆66Updated last year
• jian-shu-lab / Bering
  ☆20Updated 4 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆27Updated last month
• rajewsky-lab / openst
  Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
  ☆104Updated last month
• AI4SCR / ATHENA
  ☆34Updated last month
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆119Updated 2 months ago
• saeyslab / harpy
  Single-cell spatial proteomics analysis that makes you happy!
  ☆35Updated last week
• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆45Updated 4 years ago
• gustaveroussy / sopa
  Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…
  ☆216Updated last week