JEFworks-Lab / STalign
Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
☆77Updated last year
Alternatives and similar repositories for STalign:
Users that are interested in STalign are comparing it to the libraries listed below
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆113Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 5 months ago
- ☆45Updated 4 months ago
- Bayesian Analytics for Spatial Segmentation☆26Updated 6 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆27Updated 6 months ago
- ☆50Updated 4 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆63Updated last year
- ☆46Updated last week
- ☆28Updated 6 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆77Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated last month
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆72Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆34Updated last month
- Code used to benchmark Xenium☆56Updated 9 months ago
- Spatial Single-Cell Analysis Toolkit☆91Updated 2 weeks ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆53Updated last year
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆58Updated 3 weeks ago
- ☆34Updated last year
- ☆33Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆43Updated 8 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 months ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆113Updated 7 months ago
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆25Updated 8 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- ☆38Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆38Updated this week
- Web application demonstrating 3D modeling of spatial transcriptomics☆18Updated 4 months ago
- ☆16Updated this week