Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
☆98Dec 11, 2023Updated 2 years ago
Alternatives and similar repositories for STalign
Users that are interested in STalign are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆87Nov 16, 2025Updated 5 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆43Mar 2, 2025Updated last year
- Spatial-Linked Alignment Tool☆92Dec 20, 2024Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆25Apr 8, 2025Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆35Dec 22, 2024Updated last year
- Read in Xenium, CosMx, Vizgen, STARmap PLUS, seqFISH data as Spatial or SingleCell Experiment object.☆18Sep 19, 2025Updated 7 months ago
- Python API and Jupyter widget for Vitessce☆65Apr 17, 2026Updated 2 weeks ago
- ☆53Oct 9, 2025Updated 6 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆36Sep 20, 2024Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆128Updated this week
- A novel machine learning pipeline to analyse spatial transcriptomics data☆245Apr 17, 2026Updated 2 weeks ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆449Jan 22, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial alignment of single cell transcriptomic data.☆361Jul 1, 2025Updated 9 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆171Mar 16, 2026Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆48Nov 8, 2025Updated 5 months ago
- ☆65Updated this week
- Toolbox for the processing and analysis of MALDI-MSI data☆15Sep 10, 2025Updated 7 months ago
- An open and interoperable data framework for spatial omics data☆363Apr 20, 2026Updated last week
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆44Feb 19, 2026Updated 2 months ago
- Mosaic single cell data integration using non-overlapping features☆38Sep 20, 2022Updated 3 years ago
- Spatiotemporal modeling of spatial transcriptomics☆336Feb 25, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A novel method for single-cell diagonal integration: scConfluence☆27Nov 3, 2025Updated 5 months ago
- Bayesian Analytics for Spatial Segmentation☆31May 4, 2025Updated 11 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆275Apr 23, 2026Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆31May 27, 2025Updated 11 months ago
- Bayesian Segmentation of Spatial Transcriptomics Data☆204Apr 23, 2026Updated last week
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆102Feb 26, 2025Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Jul 4, 2022Updated 3 years ago
- Image registration (alignment) software for large microscopy images☆27Oct 15, 2023Updated 2 years ago
- ☆29Jan 4, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Reproducible analyses for the NicheCompass manuscript☆14Jul 3, 2025Updated 9 months ago
- ☆29Apr 26, 2024Updated 2 years ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 6 months ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 9 months ago
- An introduction to OME-Zarr for big bioimaging data☆26Apr 15, 2026Updated 2 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆167Updated this week