JEFworks-Lab / STalignLinks
Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
☆91Updated last year
Alternatives and similar repositories for STalign
Users that are interested in STalign are comparing it to the libraries listed below
Sorting:
- Spatial Single-Cell Analysis Toolkit☆103Updated 4 months ago
- ☆39Updated 3 weeks ago
- ☆66Updated this week
- ☆50Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 8 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆141Updated this week
- Bayesian Analytics for Spatial Segmentation☆30Updated 6 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated this week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆63Updated 5 months ago
- Join subcellular Visium HD bins into cells☆128Updated last week
- ☆51Updated 4 months ago
- Python package for Probe set selection for targeted spatial transcriptomics.☆45Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆68Updated last year
- Code used to benchmark Xenium☆70Updated last year
- Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…☆28Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆43Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆56Updated last year
- ☆39Updated last year
- ☆52Updated 4 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated 2 weeks ago
- CAST package☆40Updated last year
- Spatial direct messaging detected by bivariate Moran☆31Updated 4 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆33Updated 7 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- ☆40Updated 2 years ago