Alternatives and similar repositories for mcutils

Users that are interested in mcutils are comparing it to the libraries listed below

• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 2 months ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆21Updated 4 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆23Updated 3 months ago
• lh3 / gfa1
  This repo is deprecated. Please use gfatools instead.
  ☆15Updated 7 years ago
• richarddurbin / syng
  syncmer graphs, and perhaps other sorts of sequence graphs
  ☆21Updated 7 months ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• SchulzLab / ORNA
  Fast in-silico normalization algorithm for NGS data
  ☆23Updated 3 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• DecodeGenetics / read_haps
  Detects human contamination in bam files
  ☆16Updated 5 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 4 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated last year
• fritzsedlazeck / sge_mummer
  Scripts to split reference and run mummer in parallel on an SGE cluster
  ☆11Updated 9 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 4 years ago
• kcleal / svbench
  Benchmark structural variant calls against a reference set
  ☆17Updated last year
• ksahlin / BESST_RNA
  Scaffolding of genomic assemblies with RNA seq data
  ☆15Updated 10 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 4 months ago
• Parsoa / Nebula
  Ultra-efficient mapping-free structural variation genotyper
  ☆19Updated 4 years ago
• photocyte / plot_mitochondrial_genome_with_CIRCOS
  ☆15Updated 7 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• ldenti / palss
  ☆22Updated last month
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 3 years ago
• gjun / muCNV
  ☆20Updated last year
• luntergroup / polyploid
  Benchmarking variant calling in polyploids
  ☆15Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• Gabaldonlab / haplotypo
  This is the Haplotypo repository
  ☆22Updated last year