☆13Sep 11, 2025Updated 11 months ago
Alternatives and similar repositories for mcutils
Users that are interested in mcutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- Simple R script for plotting ideograms and annotating with bed files.☆13Sep 21, 2015Updated 10 years ago
- full taxonomer cython repository☆22Dec 1, 2019Updated 6 years ago
- reference free variant assembly☆34Jul 14, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- ☆11Apr 3, 2023Updated 3 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- What's The Function of these genes?☆22Mar 17, 2017Updated 9 years ago
- Fast & accurate alignment of barcoded short-reads☆32Jun 29, 2023Updated 3 years ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Sep 26, 2016Updated 9 years ago
- Repetitive motif detection by Assembly of Repetitive K-mers. RepARK is free for academic and non-profit use. By downloading you agree wit…☆16Sep 16, 2024Updated last year
- A web wrapper for GeneValidator☆11Feb 12, 2021Updated 5 years ago
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Feb 7, 2026Updated 6 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Jan 21, 2016Updated 10 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 12 years ago
- ☆21Dec 26, 2025Updated 8 months ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆98Nov 23, 2024Updated last year
- Structural variant detection and association testing☆109Feb 2, 2023Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Jan 14, 2022Updated 4 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- In-silico doublet annotation for single cell RNA sequencing data☆11Jan 7, 2026Updated 7 months ago
- Genome-wide reconstruction of complex structural variants☆39Jun 21, 2022Updated 4 years ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆21Aug 13, 2024Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 4 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 7 years ago
- SEEKIN: SEquence-based Estimation of KINship☆15Oct 11, 2017Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A software for discovery, genotyping and characterization of structural variants☆22Sep 11, 2024Updated last year
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Aug 23, 2019Updated 7 years ago
- Making diploid assembly becomes common practice for genomic study☆30Oct 2, 2017Updated 8 years ago
- Multi-threaded Distributed Memory Overlap-Layout-Consensus (OLC) Metagenome Assembler☆24Apr 10, 2019Updated 7 years ago