mchaisso / mcutils
☆12Updated 3 years ago
Alternatives and similar repositories for mcutils:
Users that are interested in mcutils are comparing it to the libraries listed below
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- ☆15Updated 7 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆11Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- ☆14Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Detects human contamination in bam files☆16Updated 4 years ago
- ☆16Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 weeks ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆32Updated 2 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 9 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- ☆15Updated 4 years ago
- Benchmark structural variant calls against a reference set☆17Updated 5 months ago
- Genome assembly quality improvement assisted by alternative assemblies and paired-end Illumina reads☆7Updated 6 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- comparative genome dot plot viewer☆9Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Archived version 1.0.2☆16Updated 5 years ago