theislab / inVAELinks
Invariant Representation learning
☆18Updated last year
Alternatives and similar repositories for inVAE
Users that are interested in inVAE are comparing it to the libraries listed below
Sorting:
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆32Updated last week
- ☆40Updated last week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆38Updated 5 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 11 months ago
- Nonnegative spatial factorization for multivariate count data☆62Updated 2 years ago
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 3 years ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆63Updated this week
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆56Updated this week
- Non-parametric density inference for single-cell analysis.☆74Updated 6 months ago
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 10 months ago
- A set of files to do genomics analysis on python☆18Updated 6 months ago
- spatial transcriptome, single cell☆72Updated 2 years ago
- A python implementation of scran computeSumFactors: normalization by deconvolution for single-cell RNA-sequencing☆34Updated 2 years ago
- Learning motif contributions to cell transitions using sequence features and graphs.☆28Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆67Updated last month
- ☆26Updated last year
- A single-cell analysis toolkit to jointly analyze samples from distinct conditions☆34Updated 8 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆27Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆47Updated last month
- Simple scVI implementation☆12Updated last week
- ☆50Updated 2 months ago
- CAST package☆41Updated last year
- Registry for scverse ecosystem packages☆31Updated this week
- ☆45Updated 4 months ago
- Test genes for Spatial Variation☆15Updated 11 months ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆70Updated last month
- Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)☆23Updated 2 months ago
- ☆22Updated 3 years ago
- Co-accessibility network from single-cell ATAC-seq data. Python code with AnnData, based on Cicero algorithm.☆29Updated 2 weeks ago