theislab / inVAELinks
Invariant Representation learning
☆18Updated last year
Alternatives and similar repositories for inVAE
Users that are interested in inVAE are comparing it to the libraries listed below
Sorting:
- ☆40Updated this week
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆39Updated 3 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆27Updated 9 months ago
- Simple scVI implementation☆12Updated 2 weeks ago
- A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.☆32Updated 3 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- Bayesian model for RNA velocity estimation of periodic manifolds☆33Updated last year
- Spatial reconstruction of dissociated single-cell data☆19Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆55Updated last week
- Non-parametric density inference for single-cell analysis.☆72Updated 5 months ago
- spatial transcriptome, single cell☆71Updated 2 years ago
- ☆50Updated 3 weeks ago
- Differential spatial enrichment across conditions☆20Updated last month
- Nonnegative spatial factorization for multivariate count data☆60Updated 2 years ago
- ☆45Updated 3 months ago
- CAST package☆40Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆59Updated this week
- ☆26Updated last year
- Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.☆50Updated 9 months ago
- Test genes for Spatial Variation☆15Updated 10 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆67Updated this week
- ☆61Updated last year
- Powerful and lightweight package to identify tissue compartments in spatial transcriptomics datasets.☆18Updated 4 months ago
- Learning cell communication from spatial graphs of cells☆113Updated last year
- Python implementation of the Slingshot pseudotime algorithm☆66Updated this week
- ☆65Updated last week
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 8 months ago
- Multi-modal single cell analysis pipelines☆59Updated last week