ekvall93 / ELDLinks
☆32Updated 9 months ago
Alternatives and similar repositories for ELD
Users that are interested in ELD are comparing it to the libraries listed below
Sorting:
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆12Updated 2 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆25Updated 6 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆61Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆21Updated 4 months ago
- ☆13Updated last month
- ☆54Updated 7 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- ☆35Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- ☆22Updated 5 months ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆20Updated 2 weeks ago
- ☆142Updated 9 months ago
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆67Updated last year
- Multimodality Fusion Subtyping (Nature Communications)☆27Updated 5 months ago
- ☆39Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- ☆51Updated 4 months ago
- A public MuSpAn page for community discussions and issue reporting.☆13Updated last week
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆54Updated this week
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 5 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- ☆52Updated 4 years ago
- version 1 scripts for CODA☆55Updated last year
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆67Updated 11 months ago
- ☆37Updated 2 months ago