landau-lab / PATHLinks
☆18Updated 11 months ago
Alternatives and similar repositories for PATH
Users that are interested in PATH are comparing it to the libraries listed below
Sorting:
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆40Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆32Updated 6 months ago
- ☆26Updated last year
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆19Updated 4 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆37Updated 4 years ago
- ☆29Updated 2 years ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆53Updated 2 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 2 years ago
- Code, data and analysis for moslin.☆14Updated 10 months ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 9 months ago
- ScoMAP is an R package to spatially integrate single-cell omics data into virtual cells and infer enhancer-to-gene relationships.☆27Updated 3 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆33Updated 3 years ago
- Population balance analysis☆44Updated 6 years ago
- ☆35Updated 5 months ago
- scWGCNA☆61Updated 2 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆37Updated last week
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- ☆37Updated last year
- ☆49Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 5 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- This is the code release for paper Continuous State HMMs for Modeling Time Series Single Cell RNA-Seq Data☆22Updated 7 years ago
- ☆29Updated 5 months ago
- Gene Set + S2G strategy annotations analyzed for disease architecture☆53Updated 2 years ago
- Lineage Tracing by Integrating Mutation and Transcriptomic data☆13Updated 5 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆59Updated 3 years ago