walsh-quail-labs / IMC-LungLinks
☆20Updated 2 years ago
Alternatives and similar repositories for IMC-Lung
Users that are interested in IMC-Lung are comparing it to the libraries listed below
Sorting:
- ☆20Updated 2 years ago
- ☆34Updated 2 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- CAST package☆41Updated last year
- ☆31Updated 10 months ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 6 months ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆19Updated 3 years ago
- A computational tool for identification of 3D multi-modal spatial neighborhoods☆14Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆32Updated 5 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 10 months ago
- ☆21Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆30Updated 7 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆44Updated 4 months ago
- Spatial One☆30Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆29Updated last year
- ☆13Updated 3 years ago
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Updated 2 years ago
- An R package for performing cell typing in SMI and other single cell data☆45Updated 7 months ago
- ☆21Updated 5 months ago
- Methods for visualization and analysis of spatially-resolved gene expression☆21Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆41Updated 9 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆69Updated 3 weeks ago
- ☆23Updated 2 years ago
- ☆40Updated last year
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated 10 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆20Updated last year
- R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients☆30Updated 7 months ago