Alternatives and similar repositories for FISHscale:

Users that are interested in FISHscale are comparing it to the libraries listed below

• Vizgen / vizgen-postprocessing
  The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.
  ☆26Updated 5 months ago
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆75Updated last year
• AllenInstitute / scrattch
  Single cell RNA-seq analysis for transcriptomic type characterization
  ☆36Updated 2 weeks ago
• BrainStOrmics / Spaco
  Spatially constrained color profiling for visualizing single-cell resolution spatial data
  ☆24Updated 5 months ago
• LouisFaure / scFates
  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
  ☆51Updated last week
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• Wei-BioMath / NeuronChat
  ☆33Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆25Updated 7 months ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆23Updated last year
• AllenInstitute / cell_type_mapper
  Repository for storing prototype functionality implementations for the BKP
  ☆23Updated last week
• zhengli09 / BASS
  Bayesian Analytics for Spatial Segmentation
  ☆25Updated 5 months ago
• jian-shu-lab / Bering
  ☆15Updated last month
• scverse / spatialdata-io
  ☆50Updated last week
• linnarsson-lab / developing-human-brain
  ☆31Updated 6 months ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆33Updated 10 months ago
• theislab / spapros
  Python package for Probe set selection for targeted spatial transcriptomics.
  ☆33Updated 3 months ago
• prabhakarlab / Banksy_py
  ☆41Updated 3 months ago
• wollmanlab / JSTA
  ☆14Updated 3 years ago
• acycliq / pciSeq
  A probabilistic cell typing algorithm for spatial transcriptomics.
  ☆23Updated this week
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆109Updated last week
• devsystemslab / snapseed
  ☆14Updated last year
• aristoteleo / spateo-viewer
  Web application demonstrating 3D modeling of spatial transcriptomics
  ☆18Updated 3 months ago
• dpeerlab / ENVI
  ☆45Updated 4 months ago
• willtownes / nsf-paper
  Nonnegative spatial factorization for multivariate count data
  ☆57Updated last year
• dcjones / proseg
  Probabilistic cell segmentation for in situ spatial transcriptomics
  ☆64Updated this week
• seqscope / ficture
  ☆33Updated last month
• HiDiHlabs / ssam
  ☆27Updated 5 months ago
• quadbio / VoxHunt
  VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps
  ☆44Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆33Updated 3 weeks ago
• BodenmillerGroup / imcRtools
  An R package for handling and analysing imaging mass cytometry data
  ☆24Updated 4 months ago