linnarsson-lab / FISHscaleLinks
Spatial analysis of FISH data
☆32Updated 5 months ago
Alternatives and similar repositories for FISHscale
Users that are interested in FISHscale are comparing it to the libraries listed below
Sorting:
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated last year
- Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.☆50Updated 4 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆89Updated last year
- Python package for Probe set selection for targeted spatial transcriptomics.☆44Updated 3 weeks ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆61Updated 2 months ago
- ☆22Updated this week
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆39Updated 7 months ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated this week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆27Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆84Updated 3 months ago
- ☆38Updated 2 months ago
- CAST package☆40Updated 11 months ago
- ☆73Updated last week
- Single cell RNA-seq analysis for transcriptomic type characterization☆37Updated last month
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- ☆41Updated 2 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- ☆19Updated 6 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆61Updated 4 months ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated this week
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆139Updated last week
- ☆15Updated 3 years ago
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆65Updated 3 months ago
- Repository for storing prototype functionality implementations for the BKP☆35Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆41Updated last week
- characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular dens…☆81Updated 3 years ago
- Identification of spatial homogeneous regions☆21Updated 2 weeks ago
- An R package for performing cell typing in SMI and other single cell data☆42Updated 5 months ago