Alternatives and similar repositories for shaman

Users that are interested in shaman are comparing it to the libraries listed below

• ying14 / yingtools2
  Ying's tools for analysis, with particular focus on microbiome data
  ☆41Updated last month
• ScientistJake / Shiny_BLAST
  ☆17Updated 7 years ago
• jgolob / maliampi
  Maximum Likelihood Amplicon Pipeline
  ☆22Updated last year
• vallenderlab / MicrobiomeR
  A comprehensive and customizable R package for microbiome analysis.
  ☆23Updated 4 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆75Updated 2 years ago
• SchlossLab / mikropml
  User-Friendly R Package for Supervised Machine Learning Pipelines
  ☆60Updated last month
• lvulliard / BioCircos.R
  Htmlwidgets binding R commands to the BioCircos.js library
  ☆39Updated 6 years ago
• YuLab-SMU / ggtreeExtra
  Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  ☆95Updated last month
• shandley / Microbiome-Analysis-Using-R
  Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
  ☆27Updated 3 years ago
• itsmisterbrown / microfiltR
  accessory functions for processing microbial community data
  ☆12Updated 2 years ago
• jbisanz / MicrobeR
  Handy tools for Microbiome analysis in R
  ☆18Updated 6 years ago
• ChrisLou-bioinfo / gg.gap
  Easy to define segments in y-axis for 'ggplot2'.
  ☆27Updated 6 years ago
• brendankelly / micropower
  power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA
  ☆39Updated 10 years ago
• arendsee / rhmmer
  Simple R utilities for working with HMMER
  ☆19Updated last year
• SchlossLab / schtools
  Schloss Lab Tools for Reproducible Microbiome Research 💩
  ☆31Updated 2 years ago
• GMOD / JBrowseR
  R interface to the JBrowse 2 Linear Genome View.
  ☆39Updated last year
• nhanhocu / metamicrobiomeR
  An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…
  ☆34Updated 5 years ago
• microsud / dysbiosisR
  The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures
  ☆15Updated 3 years ago
• yijuanhu / LDM-Archive
  Linear Decomposition Model
  ☆25Updated 2 years ago
• CharlieCarpenter / tidyMicro
  tidyMicro GitHup Repository
  ☆21Updated 4 years ago
• fkeck / bioseq
  A Toolbox for Manipulating Biological Sequences in R
  ☆26Updated 2 months ago
• mblstamps / stamps2018
  STAMPS 2018 course
  ☆15Updated 7 years ago
• barreiro-r / fastqc-viz
  A modest re-desing update for the classic FastQC report.
  ☆29Updated 3 months ago
• tbradley1013 / tree-subset-shiny
  This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees
  ☆15Updated 6 years ago
• tmbuza / iMAP
  iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
  ☆13Updated last year
• gschofl / reutils
  Talk to the NCBI EUtils
  ☆22Updated 5 years ago
• pcastellanoescuder / POMA
  Omics Data Analysis Tools
  ☆14Updated last year
• gmbecker / genbankr
  ☆20Updated 2 years ago
• ggloor / ALDEx_bioc
  ALDEx_bioc is the working directory for updating bioconductor
  ☆29Updated 7 months ago
• guokai8 / microbial
  Do microbiome analysis with dada2 and phyloseq object
  ☆14Updated last year