SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
☆13Feb 5, 2025Updated last year
Alternatives and similar repositories for shaman
Users that are interested in shaman are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Metagenomic AnalySis with QUantitative pipEline☆12Apr 24, 2019Updated 7 years ago
- A served-oriented repository of Shiny apps and Rmd documents☆11Feb 18, 2026Updated 7 months ago
- Example using Docker, Nginx with auth-request module, and Django acting as a authentication wrapper around a Shiny app.☆21Jun 9, 2025Updated last year
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- ngshmmalign is a profile HMM aligner for NGS reads designed particularly for small genomes (such as those of RNA viruses like HIV-1 and H…☆10May 3, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing☆11Sep 11, 2026Updated last month
- This is the site where we store shared code for the Michigan Mycology Lab☆17Apr 10, 2024Updated 2 years ago
- A continually expanding collection of microbiome analysis tools☆19May 25, 2026Updated 4 months ago
- iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline☆13Feb 10, 2026Updated 8 months ago
- Web-based Workflow for Metabolomics and Proteomics Data Analysis☆19Mar 25, 2026Updated 6 months ago
- Tiny Image Processing in ECMAScript☆15Feb 7, 2018Updated 8 years ago
- Node.js module to launch a R Shiny app in multiple workers☆35Apr 21, 2018Updated 8 years ago
- A comprehensive and customizable R package for microbiome analysis.☆24Sep 6, 2026Updated last month
- ☆13Jul 26, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- scripts for parsing PDB, fasta, and GO☆16Oct 20, 2021Updated 4 years ago
- Comprehensive resistance detection from WGS data☆21Sep 4, 2026Updated last month
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Assessing the quality of genomes using busco☆17Mar 23, 2023Updated 3 years ago
- ggtikz: Add TikZ annotations with absolute data or relative plot coordinates to ggplots☆11Nov 6, 2025Updated 11 months ago
- Maximum Likelihood Amplicon Pipeline☆22Aug 31, 2026Updated last month
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Nov 12, 2020Updated 5 years ago
- Semi-parametric simulation of bulk and single cell RNA-seq data☆10Nov 17, 2024Updated last year
- Survey of bioinformatics field☆27Mar 18, 2012Updated 14 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for cli…☆29Aug 9, 2026Updated 2 months ago
- Plann: a command-line application for annotating plastome sequences☆13Aug 5, 2022Updated 4 years ago
- A tool to infer metagenomic sample composition☆20Oct 10, 2023Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆69Aug 12, 2019Updated 7 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆38Feb 1, 2023Updated 3 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- VirBot: a protein-based RNA virus detector for metagenomic data☆35Jul 29, 2024Updated 2 years ago
- Argument Mining Python implementation☆13Jul 28, 2023Updated 3 years ago
- FROGS is a galaxy/CLI workflow designed to produce an OTUs count matrix from high depth sequencing amplicon data.☆37Mar 24, 2026Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An R package to retrieve the county-level fertilizer estimate data from 1945 to 2012 in USA.☆11Jun 29, 2018Updated 8 years ago
- Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics☆18Dec 2, 2024Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v…☆33Sep 14, 2020Updated 6 years ago
- The START App: R Shiny Transcriptome Analysis Resource Tool☆87Nov 11, 2020Updated 5 years ago
- Microbiome research☆22May 24, 2022Updated 4 years ago
- Intro to git for scientists and other regular people☆12Nov 1, 2021Updated 4 years ago