aghozlane / shamanLinks
SHAMAN is a SHiny application for Metagenomic ANalysis including a bioinformatic workflow, the statistical analysis and multiple visualization.
☆13Updated 6 months ago
Alternatives and similar repositories for shaman
Users that are interested in shaman are comparing it to the libraries listed below
Sorting:
- Htmlwidgets binding R commands to the BioCircos.js library☆39Updated 6 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 2 weeks ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Handy tools for Microbiome analysis in R☆18Updated 6 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- Omics Data Analysis Tools☆12Updated 9 months ago
- Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.☆27Updated 3 years ago
- ☆17Updated 7 years ago
- power estimation for microbiome studies analyzed with pairwise distances and PERMANOVA☆38Updated 9 years ago
- An R package for analysis of microbiome relative abundance data using zero inflated beta GAMLSS and meta-analysis across microbiome studi…☆34Updated 4 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”☆94Updated 2 weeks ago
- R package computes correlation for relative abundances☆13Updated 8 years ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 9 months ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Simple R utilities for working with HMMER☆20Updated 10 months ago
- This repo contains the code for a shiny app that allows for visualization of subset phylogenetic trees☆15Updated 6 years ago
- accessory functions for processing microbial community data☆12Updated 2 years ago
- Talk to the NCBI EUtils☆22Updated 4 years ago
- The is mostly a wrapper tool using phyloseq and microbiome R packages.☆34Updated 2 years ago
- R interface to the JBrowse 2 Linear Genome View.☆38Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆46Updated 9 months ago
- R shiny app for interactive microbiome analysis☆55Updated 2 months ago
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Tools for visualising microbial community amplicon data☆67Updated last week
- Representation and manipulation of genomic intervals☆46Updated 2 months ago
- Workshop for NGS'18 conference, Barcelona 2018☆24Updated 6 years ago
- Experimental pipeline to perform de novo PICRUSt on de-noised amplicon sequence variants (ASV)☆19Updated 6 years ago
- The dysbiosisR package implements tools for calculating some common microbiome dysbiosis measures☆15Updated 2 years ago
- STAMPS 2018 course☆15Updated 7 years ago