Alternatives and similar repositories for AmpliGone

Users that are interested in AmpliGone are comparing it to the libraries listed below

• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆37Updated last week
• lskatz / pdtk
  NCBI Pathogen Detection Portal toolkit
  ☆11Updated 2 years ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated 6 months ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 5 months ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• mjsull / chromatiblock
  Colinear block visualisation tool
  ☆31Updated 2 years ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆39Updated 10 months ago
• OLC-Bioinformatics / ConFindr
  Intra-species bacterial contamination detection
  ☆25Updated 11 months ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆20Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆80Updated last month
• phiweger / ideel
  Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
  ☆15Updated 7 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆28Updated 5 months ago
• MDU-PHL / meningotype
  In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis
  ☆14Updated 11 months ago
• CFSAN-Biostatistics / shigatyper
  CFSAN Shigella Typing Pipeline
  ☆15Updated 2 years ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆15Updated 5 months ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆22Updated 5 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 4 months ago
• ubinfie / ubinfie.github.io
  µbinfie blog
  ☆18Updated 6 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated last week
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated last week
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 4 months ago
• tseemann / seeka
  Get microbial sequence data easier and faster
  ☆28Updated 6 years ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• NickJD / ORForise
  Comparison pipeline for Prokaryote Protein Coding Gene Predictors
  ☆28Updated last week
• andrewjpage / krocus
  Predict MLST directly from uncorrected long reads
  ☆27Updated 2 months ago
• thackl / proovframe
  frame-shift correction for long-read (meta)genomics
  ☆33Updated 2 years ago
• UPHL-BioNGS / Grandeur
  UPHL's Reference Free Pipeline
  ☆27Updated 3 months ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆42Updated 3 years ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆23Updated 6 years ago