RIVM-bioinformatics / AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
☆16Updated last month
Alternatives and similar repositories for AmpliGone:
Users that are interested in AmpliGone are comparing it to the libraries listed below
- Colinear block visualisation tool☆30Updated last year
- Intra-species bacterial contamination detection☆25Updated 2 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- Genome size estimation from long read overlaps☆55Updated 3 weeks ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆25Updated 3 weeks ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 weeks ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆24Updated last month
- A pipeline for bioinformatics analysis of bacterial genomes☆28Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆23Updated 9 months ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆37Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆44Updated 2 weeks ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆30Updated last month
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆18Updated 4 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆45Updated 2 weeks ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Evaluating Nanopore-based bacterial variant calling☆18Updated 4 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 6 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆14Updated last year
- Resolving Species Level Classification Using Emu☆12Updated 10 months ago
- Fast viral consensus genome reconstruction☆22Updated 4 months ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 3 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last year
- ccfind - circular complete genome finder with clues of terminal redundancy☆15Updated 4 years ago