☆31Apr 26, 2024Updated 2 years ago
Alternatives and similar repositories for spatial-transcriptomics-pipeline
Users that are interested in spatial-transcriptomics-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A scalable machine learning pipeline for probe specificity prediction.☆14Aug 14, 2026Updated 2 months ago
- Deep Learning Library for Spot Detection☆24Jun 4, 2026Updated 4 months ago
- Building Gene Sets and Mapping mFISH Data☆16Aug 20, 2025Updated last year
- RNA smFISH oligos/probes design tool☆14Oct 14, 2026Updated 2 weeks ago
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆88Nov 16, 2025Updated 11 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆71Oct 1, 2023Updated 3 years ago
- A relabeling tool for tiled segmentation with Dask☆18Sep 24, 2024Updated 2 years ago
- GBWT-based handle graph☆37Oct 23, 2026Updated last week
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- GPU accelerated post-processing for 2D or 3D imaging spatial transcriptomics data.☆10Oct 9, 2026Updated 3 weeks ago
- ☆28Oct 12, 2024Updated 2 years ago
- ☆73Jan 18, 2023Updated 3 years ago
- Threshold independent detection and localization of diffraction-limited spots.☆39Oct 13, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A performant scientific image visualization system.☆36Aug 5, 2026Updated 2 months ago
- GIve easy, high-level access to ome-zarr fileset☆24Sep 22, 2025Updated last year
- Accurate and efficient spot detection for microscopy data☆147Jun 8, 2026Updated 4 months ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 4 years ago
- Analysis of smFISH data☆12Aug 27, 2018Updated 8 years ago
- Supplementary files and notebooks to recreate figures.☆24Aug 4, 2026Updated 2 months ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆28Jan 6, 2023Updated 3 years ago
- ☆21Oct 15, 2026Updated 2 weeks ago
- A tutorial on NMFreg applied to cerebellum data.☆12Apr 7, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Aug 11, 2026Updated 2 months ago
- ☆41Oct 14, 2026Updated 2 weeks ago
- starfish: unified pipelines for image-based transcriptomics☆252Oct 23, 2026Updated last week
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 9 months ago
- Spatial analysis of FISH data☆32Jun 5, 2026Updated 4 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆116Oct 16, 2026Updated 2 weeks ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆199Oct 17, 2026Updated 2 weeks ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Static plotting for spatialdata☆89Oct 19, 2026Updated last week
- Using color jitter to distinguish individuals in categorically colored visualizations☆11Apr 17, 2024Updated 2 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Multiple sequence alignment of long tandem repeats☆34Oct 9, 2026Updated 3 weeks ago
- ☆36Dec 22, 2024Updated last year
- Bayesian Segmentation of Spatial Transcriptomics Data☆219Oct 2, 2026Updated 3 weeks ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago