TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region
☆22Apr 2, 2026Updated last week
Alternatives and similar repositories for TADA
Users that are interested in TADA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Documentation for analyzing SARS-Cov2 samples.☆12Jun 4, 2020Updated 5 years ago
- Influenza genome analysis Nextflow workflow☆32Sep 15, 2025Updated 6 months ago
- A more efficient quality control tool for sequencing data☆33May 27, 2025Updated 10 months ago
- R package to run BEAST2☆11Dec 8, 2025Updated 4 months ago
- ☆12Mar 15, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool☆10Updated this week
- Quality control plotting for long reads☆10May 14, 2024Updated last year
- fastHaN is a fast and scalable program for constructing haplotype networks for large samples☆20Feb 14, 2024Updated 2 years ago
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 6 years ago
- ☆19Jan 16, 2024Updated 2 years ago
- Automated pipeline for amplicon sequence analysis☆11Nov 25, 2025Updated 4 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆160Mar 18, 2026Updated 3 weeks ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- ☆10Jan 20, 2022Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- ☆20Dec 4, 2025Updated 4 months ago
- A simple-to-use tool for visualizing and comparing genome contexts for numerous genomes☆18Dec 1, 2025Updated 4 months ago
- Sequence-independent identification and removal of adapters/systemic contamination in shotgun sequencing data. https://doi.org/10.1093/bi…☆18Apr 4, 2023Updated 3 years ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 4 months ago
- Compressor for Nanopore Sequencing Reads☆23Feb 10, 2023Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Updated this week
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆106Jan 22, 2026Updated 2 months ago
- Read contamination removal☆25Jan 24, 2024Updated 2 years ago
- ☆23Sep 27, 2019Updated 6 years ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- **DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version☆20Nov 1, 2019Updated 6 years ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆106Mar 31, 2026Updated last week
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Oct 4, 2024Updated last year
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 4 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆94Dec 13, 2024Updated last year
- ☆15Oct 14, 2023Updated 2 years ago
- Handy tools for Microbiome analysis in R☆18May 22, 2019Updated 6 years ago
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆14Jun 12, 2024Updated last year