Alternatives and similar repositories for MAGMA

Users that are interested in MAGMA are comparing it to the libraries listed below

• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆28Updated last week
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated last year
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆29Updated last year
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆39Updated 3 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆42Updated 4 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last week
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆25Updated 2 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• theiagen / public_health_bacterial_genomics
  ☆26Updated 2 years ago
• cidgoh / bacpaq
  Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
  ☆12Updated 3 months ago
• zheminzhou / pHierCC
  Hierarchical clustering of cgMLST
  ☆11Updated last year
• angelovangel / nxf-kraken2
  A simple nextflow pipeline for running kraken2 and bracken in a docker container
  ☆20Updated 4 years ago
• jonas-fuchs / varVAMP
  Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.
  ☆41Updated last month
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆29Updated 8 months ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• metagentools / VStrains
  VStrains is a de novo approach for reconstructing strains from viral quasispecies.
  ☆23Updated 7 months ago
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆38Updated 2 years ago
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
  ☆21Updated 2 years ago
• Sanrrone / GGisy
  Genome-Genome circle synteny
  ☆25Updated last year
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆39Updated last week
• NBISweden / aMeta
  Ancient microbiome snakemake workflow
  ☆25Updated 5 months ago
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆15Updated last year
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆22Updated 4 months ago
• rrwick / Small-plasmid-Nanopore
  ☆13Updated 3 years ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆44Updated last year