A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research
☆20Aug 10, 2026Updated 2 months ago
Alternatives and similar repositories for MAGMA
Users that are interested in MAGMA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- ☆16Jun 30, 2021Updated 5 years ago
- A snakemake workflow for WGS-based tuberculosis transmission analysis☆20Dec 3, 2024Updated last year
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆48Sep 8, 2025Updated last year
- Profiling NTM WGS data☆19Oct 24, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆14Feb 9, 2025Updated last year
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.☆14Updated this week
- Mycobacterium tuberculosis next generation sequence analysis☆26Oct 11, 2019Updated 7 years ago
- CoVigator - Monitoring SARS-CoV-2 mutations☆12Aug 2, 2024Updated 2 years ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆28Aug 2, 2023Updated 3 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆33Oct 5, 2026Updated 3 weeks ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- A tooL for Prokaryotic Phylogeny And Clustering Analysis☆14Aug 5, 2026Updated 2 months ago
- Pipeline for creating comprehensive viral reference sets.☆12Updated this week
- Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data☆143Oct 25, 2026Updated last week
- In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)☆10Jun 17, 2026Updated 4 months ago
- Finding regions of similarity between plasmids☆17Jul 15, 2026Updated 3 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- snpless-nf - A Nextflow pipeline for time-course analysis with bacterial NGS whole-genome data.☆14May 12, 2024Updated 2 years ago
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Influenza genome analysis Nextflow workflow☆28Jun 3, 2026Updated 4 months ago
- Reference-based consensus creation☆61Updated this week
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- Workflow for whole genome sequencing based phylogeny of Illumina and ONT R9/R10 data.☆11Oct 7, 2026Updated 3 weeks ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Real-time analysis pipeline for nanopore 16S rRNA data☆15Nov 29, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- µbinfie blog☆19Jul 21, 2025Updated last year
- A simple pipeline for bacterial assembly and quality control☆17Oct 22, 2026Updated last week
- A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration wi…☆11Sep 18, 2026Updated last month
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Jul 2, 2022Updated 4 years ago
- course about NGS data processing: genomics and transcriptomics☆33Feb 14, 2026Updated 8 months ago
- The genTB project, the Django site, variant calling and prediciton pipeline, and mapping pipeline with hooks to two ravens☆10Apr 6, 2026Updated 6 months ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆35Jul 27, 2026Updated 3 months ago