Alternatives and similar repositories for MAGMA

Users that are interested in MAGMA are comparing it to the libraries listed below

• peterk87 / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆31Updated 4 months ago
• chrisruis / MutTui
  MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets
  ☆33Updated last year
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• angelovangel / nxf-kraken2
  A simple nextflow pipeline for running kraken2 and bracken in a docker container
  ☆20Updated 3 months ago
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆38Updated 3 years ago
• muzafferarikan / gNOMO2
  gNOMO2 allows integrated multi-omics analyses of microbiomes
  ☆15Updated last year
• zheminzhou / pHierCC
  Hierarchical clustering of cgMLST
  ☆13Updated 2 years ago
• mbhall88 / pistis
  Quality control plotting for long reads
  ☆10Updated last year
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated 3 months ago
• cmmr / EsViritu
  Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
  ☆49Updated last week
• cidgoh / bacpaq
  Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data
  ☆12Updated last month
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• theiagen / public_health_bacterial_genomics
  ☆26Updated 2 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆26Updated 2 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 4 years ago
• farhat-lab / fast-lineage-caller
  ☆14Updated 4 years ago
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆17Updated last month
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 5 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆24Updated this week
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆25Updated 3 weeks ago
• HKU-BAL / MegaPath-Nano
  MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…
  ☆13Updated 3 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• MHH-RCUG / nf_wochenende
  A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
  ☆15Updated last year
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆20Updated last year
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆37Updated last week
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆64Updated last week
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆60Updated 11 months ago
• bacpop / PopPIPE
  Population analysis PIPEline 🛠🧬
  ☆22Updated 3 weeks ago