WGLab / VirTectLinks
Detection of viruses from RNA-Seq on human samples
☆45Updated 2 years ago
Alternatives and similar repositories for VirTect
Users that are interested in VirTect are comparing it to the libraries listed below
Sorting:
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 3 months ago
- QDNAseq package for Bioconductor☆50Updated 11 months ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆22Updated 2 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆53Updated 4 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- Tumor Mutational Burden☆61Updated 10 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆34Updated last year
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- tools to find circRNAs in RNA-seq data☆43Updated 7 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 4 months ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- GIREMI is a method that can identify RNA editing sites using one RNA-seq data set without requiring genome sequence data.☆44Updated 8 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last month
- ☆46Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- cfDNA cell type of origin estimation☆31Updated last year
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Tools for analyzing DNA methylation data☆42Updated last week
- ☆69Updated 2 years ago
- ☆21Updated last week