PMBio / cyclone
cyclone
☆18Updated 9 years ago
Related projects ⓘ
Alternatives and complementary repositories for cyclone
- R package to identify genes with differential distributions in single-cell RNA-seq☆32Updated 2 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 5 months ago
- ☆53Updated last month
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 2 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated last month
- Algorithm for the inference of cell types from single-cell RNA-seq data.☆43Updated 8 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- zero-inflated negative binomial gene expression in R☆20Updated 6 years ago
- ☆29Updated 5 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆25Updated 8 years ago
- Single-CELL rna-seq analysis software☆38Updated 7 years ago
- Figure depicting the breadth of multimodal scRNA-seq technologies☆15Updated 5 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated 4 months ago
- ☆33Updated 5 years ago
- GiniClust: Detecting Rare Cell Types from Single-Cell Gene Expression Data with Gini Index☆36Updated 6 years ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆25Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- An R client for broads firehose pipeline, providing TCGA data sets☆60Updated 5 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last month
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago