PMBio / cyclone
cyclone
☆18Updated 9 years ago
Alternatives and similar repositories for cyclone:
Users that are interested in cyclone are comparing it to the libraries listed below
- R package to identify genes with differential distributions in single-cell RNA-seq☆32Updated 2 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆31Updated 4 years ago
- Transcript quantification import with automatic metadata detection☆67Updated last week
- HSCI/Catalyst Single-cell RNA-Seq Workshop☆19Updated 5 years ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- ☆33Updated 5 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- ☆53Updated 3 months ago
- ☆28Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- Identify cell barcodes from single-cell genomics sequencing experiments☆41Updated 3 years ago
- easy access to benchmark datasets☆50Updated 6 years ago
- Single-CELL rna-seq analysis software☆38Updated 7 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆47Updated last month
- processes GoT amplicon data and generates a table of metrics☆27Updated 2 years ago
- Normalization for single cell RNA-seq data☆47Updated last year
- A toolkit for working with ATAC-seq data.☆24Updated 7 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 5 months ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Preprocessing pipeline for (sc)ATAC data☆10Updated 2 years ago
- COMET Single-Cell Marker Detection tool☆31Updated 2 years ago
- Lightweight Iterative Gene set Enrichment in R☆57Updated 3 months ago
- Identify and correct invalid gene symbols☆57Updated 2 months ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Updated 6 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆10Updated 5 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Single Cell Epigenome-based Inference of Activity☆19Updated last year