metagentools / VStrains
VStrains is a de novo approach for reconstructing strains from viral quasispecies.
☆16Updated last year
Related projects: ⓘ
- ☆23Updated 7 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆21Updated last month
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Automated strain separation of low-complexity metagenomes☆47Updated 2 years ago
- Quality control plotting for long reads☆10Updated 4 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆35Updated 2 months ago
- ☆29Updated 9 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆30Updated last week
- Correcting errors in noisy long reads using variation graphs☆49Updated last year
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆18Updated 5 years ago
- Microbial agile accurate SNP Typer☆29Updated 8 months ago
- Set of utilities on sequences and BAM files☆25Updated 2 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆29Updated last year
- snapper☆13Updated 2 months ago
- viralFlye pipeline☆18Updated last month
- HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps☆13Updated last year
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆25Updated 3 weeks ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆19Updated last week
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 5 months ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆20Updated 6 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Bacterial GWAS analysis☆28Updated last week
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆38Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- Dinoflagellate Annotation Workflow☆11Updated last year
- Gene-flank analysis tool☆25Updated 4 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆27Updated last week
- Colinear block visualisation tool☆30Updated 8 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 5 years ago