VStrains is a de novo approach for reconstructing strains from viral quasispecies.
☆24Feb 22, 2026Updated 2 months ago
Alternatives and similar repositories for VStrains
Users that are interested in VStrains are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 6 months ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆18Feb 3, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Strain Resolution ON Graphs☆50Jul 18, 2023Updated 2 years ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 4 months ago
- Graph-based assembly phasing☆94Nov 25, 2025Updated 5 months ago
- ☆13Dec 3, 2024Updated last year
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 11 months ago
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 6 months ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Updated this week
- Chimera: A Versatile Metagenomic Classification Tool☆21Feb 1, 2026Updated 2 months ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆18Feb 3, 2026Updated 2 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆47Feb 12, 2026Updated 2 months ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- ☆30Sep 21, 2023Updated 2 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆20Sep 26, 2025Updated 7 months ago
- Set of tools for viral metagenomics.☆14Jan 21, 2026Updated 3 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- ☆36Nov 20, 2023Updated 2 years ago
- ☆12May 6, 2022Updated 3 years ago
- ☆67Apr 9, 2024Updated 2 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 2 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 5 months ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated 7 months ago
- ☆64Feb 27, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆36Apr 23, 2025Updated last year
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated 11 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆60Sep 23, 2025Updated 7 months ago
- reference-free transcriptome assembly for short and long reads☆109Mar 13, 2026Updated last month