VStrains is a de novo approach for reconstructing strains from viral quasispecies.
☆25Feb 22, 2026Updated 6 months ago
Alternatives and similar repositories for VStrains
Users that are interested in VStrains are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 10 months ago
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆22Nov 6, 2023Updated 2 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Aug 28, 2026Updated 3 weeks ago
- ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes☆19Feb 3, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Strain Resolution ON Graphs☆51Jul 18, 2023Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Graph-based assembly phasing☆102Nov 25, 2025Updated 9 months ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 9 months ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- ☆15Dec 3, 2024Updated last year
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 4 years ago
- VILOCA: VIral LOcal haplotype reconstruction and mutation CAlling for short and long read data☆23Oct 21, 2025Updated 10 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 4 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆26Sep 7, 2026Updated last week
- Chimera: A Versatile Metagenomic Classification Tool☆21Aug 16, 2026Updated last month
- A Rust library providing fully dynamic sets of k-mers with high locality☆47May 13, 2026Updated 4 months ago
- ☆32Sep 21, 2023Updated 2 years ago
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Reconstruction and analysis of viral and host genomes at multi-organ level☆21Apr 10, 2026Updated 5 months ago
- Visualization tool for (meta)genome assembly graphs☆50Updated this week
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆21Jul 3, 2026Updated 2 months ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- ☆36Aug 7, 2026Updated last month
- ☆12May 6, 2022Updated 4 years ago
- ☆68Apr 9, 2024Updated 2 years ago
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 6 years ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Sep 10, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆65Feb 27, 2024Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆38Apr 23, 2025Updated last year
- Set of tools for viral metagenomics.☆17Aug 17, 2026Updated last month
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆22May 3, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated 11 months ago
- ☆18Oct 7, 2024Updated last year
- reference-free transcriptome assembly for short and long reads☆112Mar 13, 2026Updated 6 months ago