Alternatives and similar repositories for scIsoPrep:

Users that are interested in scIsoPrep are comparing it to the libraries listed below

• bedapub / splicekit
  splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq
  ☆16Updated 3 weeks ago
• UPSUTER / GEMLI
  ☆30Updated 2 months ago
• veltenlab / CloneTracer
  This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…
  ☆25Updated 5 months ago
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆19Updated last year
• saezlab / greta
  Benchmark of GRNs using the GRETA pipeline
  ☆24Updated 3 weeks ago
• Lioscro / ngs-tools
  Reusable tools for working with next-generation sequencing (NGS) data
  ☆11Updated 6 months ago
• bcgsc / RNA-Scoop
  interactive visualization of single-cell transcriptomes
  ☆11Updated last year
• petervangalen / MAESTER-2021
  Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).
  ☆12Updated 10 months ago
• EraslanBas / PerturbDecode
  An end-to-end computational pipeline for large Perturb-seq screens
  ☆13Updated 2 years ago
• satijalab / PASTA
  ☆19Updated 7 months ago
• lrylaarsdam / amethyst
  An analysis toolkit for single-cell methylation sequencing data
  ☆17Updated 3 weeks ago
• Mayrlab / scUTRquant
  Bioinformatics pipeline for single-cell 3' UTR isoform quantification
  ☆21Updated 4 months ago
• cbg-ethz / SCICoNE
  Single-cell copy number calling and event history reconstruction.
  ☆23Updated 3 months ago
• shizhuoxing / scISA-Tools
  single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…
  ☆24Updated 8 months ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated last year
• wenweixiong / MARVEL
  ☆48Updated 8 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆41Updated 9 months ago
• gxiaolab / scAllele
  ☆33Updated 11 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆41Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆37Updated last year
• lhe17 / nebula
  ☆37Updated 3 weeks ago
• xryanglab / SCASL
  single-cell clustering based on alternative splicing landscapes
  ☆20Updated last year
• jmschrei / dragonnfruit
  A method for analyzing scATAC-seq experiments.
  ☆30Updated last month
• Teichlab / gene2probe
  Pipeline for designing custom probes against human genes
  ☆16Updated 5 months ago
• UcarLab / AMULET
  A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
  ☆31Updated 2 years ago
• pachterlab / CGCCP_2023
  scVI extension for unspliced RNA
  ☆16Updated 2 months ago
• cbg-ethz / COMPASS
  ☆22Updated 7 months ago
• caleblareau / mitoblacklist
  Repo for generating custom blacklist for reads originating from mitochondrial DNA to nuclear genome
  ☆19Updated 2 years ago
• Wedge-lab / dpclust
  Dirichlet Process based methods for subclonal reconstruction of tumours
  ☆29Updated 3 weeks ago
• aryarm / varCA
  Use an ensemble of variant callers to call variants from ATAC-seq data
  ☆23Updated last month