Analysis of smFISH data
☆12Aug 27, 2018Updated 8 years ago
Alternatives and similar repositories for pysmFISH
Users that are interested in pysmFISH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for processing and analyzing STARmap experiments.☆40Aug 27, 2019Updated 7 years ago
- ☆11Feb 18, 2019Updated 7 years ago
- A web tool to do automatic spots detections and positional adjustments for Spatial Transcriptomics Datasets.☆26Nov 17, 2022Updated 3 years ago
- ☆32Apr 9, 2022Updated 4 years ago
- ☆10Nov 29, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool for precise, interactive, fast and scalable FISH spot detection☆55Feb 4, 2025Updated last year
- MultiGML☆11Feb 9, 2024Updated 2 years ago
- Aligning images acquired with the IBEX microscopy imaging technique☆20Jun 28, 2026Updated 4 months ago
- Spatial analysis of FISH data☆32Jun 5, 2026Updated 4 months ago
- All the code described in the Lee et al. (2023) paper☆11May 30, 2025Updated last year
- HCR probe designer with Shiny graphical user interface☆13Aug 7, 2025Updated last year
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 7 months ago
- ☆53Apr 1, 2021Updated 5 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆11Mar 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Sep 27, 2022Updated 4 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 4 years ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Jun 11, 2021Updated 5 years ago
- starfish: unified pipelines for image-based transcriptomics☆252Updated this week
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- Echarts(v5.x | next) components for react.☆11Mar 4, 2021Updated 5 years ago
- Tigerfish☆13Jan 30, 2024Updated 2 years ago
- ☆11Oct 14, 2025Updated last year
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 9 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Dataset EXploration & Processing☆33May 11, 2023Updated 3 years ago
- manually align specimens to annotated 3D spaces☆21May 10, 2023Updated 3 years ago
- ☆10Nov 6, 2023Updated 2 years ago
- nextjs + socketio sample chat App☆12Sep 7, 2020Updated 6 years ago
- FISH Iterative Cell Typing☆11Mar 24, 2024Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Oct 22, 2025Updated last year
- ☆30Jan 4, 2024Updated 2 years ago
- Run TFLITE models on the web☆13Jan 2, 2022Updated 4 years ago
- ☆19Sep 18, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆36Updated this week
- Interactive applications of stlearn☆17May 1, 2023Updated 3 years ago
- A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).☆18Jul 10, 2018Updated 8 years ago
- Pan-3D genome analysis of soybean Hi-C data☆12Mar 6, 2023Updated 3 years ago
- SEAMLeSS (under active development)☆11Aug 23, 2021Updated 5 years ago
- ☆12May 24, 2024Updated 2 years ago
- ☆31Apr 26, 2024Updated 2 years ago