bayesrx / SpaceXLinks
SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics
☆19Updated 2 years ago
Alternatives and similar repositories for SpaceX
Users that are interested in SpaceX are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- ☆31Updated 4 months ago
- Individual level Differential Expression Analysis for Single cells☆24Updated 2 years ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆37Updated last year
- An r package that works as a wrapper to homologene☆46Updated last year
- R package for analysing single cell data☆55Updated 2 years ago
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆26Updated last month
- Easy and comprehensive biological network reconstruction and analysis☆29Updated 8 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆38Updated 3 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 11 months ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 2 months ago
- CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq☆18Updated 4 years ago
- Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.☆36Updated 2 weeks ago
- ☆41Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated 7 months ago
- R package for robust clustering of single cell RNA sequencing data☆35Updated last year
- ☆49Updated 10 months ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆23Updated last month
- Diagnostic functions to assess the quality of cell type annotations in single-cell RNA-seq data☆9Updated 3 months ago
- Repository for "Effective methods for bulk RNA-seq deconvolution using scRNA-seq and snRNA-seq derived transcriptomes"☆15Updated last year
- An R package to analyze single-cell V(D)J data☆28Updated last year
- ☆18Updated last month
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated 3 months ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆51Updated last year
- An R/Bioconductor package to identify higher-order molecular phenotypes☆16Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆20Updated last year