bayesrx / SpaceXLinks
SpaceX: Gene Co-expression Network Estimation for Spatial Transcriptomics
☆20Updated 2 years ago
Alternatives and similar repositories for SpaceX
Users that are interested in SpaceX are comparing it to the libraries listed below
Sorting:
- ☆29Updated 2 years ago
- Easy and comprehensive biological network reconstruction and analysis☆34Updated 3 months ago
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆38Updated 2 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆48Updated last year
- ConsensusTME Gene Sets and R Script☆39Updated last year
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆32Updated 11 months ago
- ☆26Updated 7 months ago
- Network construction Algorithm☆22Updated last year
- ☆48Updated last year
- ☆29Updated 2 years ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆28Updated 2 months ago
- Signac☆26Updated 2 years ago
- ☆53Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- An R package to analyze single-cell V(D)J data☆28Updated 2 years ago
- ☆25Updated 2 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- R package for analysing single cell data☆59Updated 3 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆47Updated last year
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆38Updated 3 years ago
- 🧬 Gene analysis toolkit based on R☆60Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 3 years ago