Alternatives and similar repositories for SpaceX

Users that are interested in SpaceX are comparing it to the libraries listed below

• almeidasilvaf / BioNERO
  Easy and comprehensive biological network reconstruction and analysis
  ☆34Updated 4 months ago
• noriakis / CBNplot
  Bayesian network plot for the enrichment analysis results
  ☆66Updated last year
• VCCRI / Sierra
  Discover differential transcript usage from polyA-captured single cell RNA-seq data
  ☆53Updated 2 years ago
• McGranahanLab / TcellExTRECT
  ☆48Updated last year
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆56Updated 2 years ago
• GangLiLab / genekitr
  🧬 Gene analysis toolkit based on R
  ☆61Updated last year
• PoolLab / generecovery
  ☆29Updated 2 years ago
• JinmiaoChenLab / FastIntegration
  FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis
  ☆23Updated last year
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆39Updated 2 years ago
• PCAWG-11 / Heterogeneity
  Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
  ☆44Updated 4 years ago
• DavisLaboratory / vissE
  An R/Bioconductor package to identify higher-order molecular phenotypes
  ☆19Updated 2 years ago
• cansysbio / ConsensusTME
  ConsensusTME Gene Sets and R Script
  ☆39Updated last year
• satijalab / Mixscale
  ☆23Updated 3 months ago
• UPSUTER / GEMLI
  ☆33Updated last year
• seasoncloud / Alleloscope
  Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…
  ☆31Updated 2 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆44Updated this week
• rnabioco / djvdj
  An R package to analyze single-cell V(D)J data
  ☆28Updated 2 years ago
• NMikolajewicz / scMiko
  R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…
  ☆33Updated 2 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• JinmiaoChenLab / ezSingleCell2
  ☆57Updated 2 years ago
• Core-Bioinformatics / ClustAssess
  Tools for assessing clustering robustness
  ☆31Updated last week
• qinqian / lisa
  epigenome analysis to rank transcription factors
  ☆33Updated 3 years ago
• Simon-Leonard / FlexDotPlot
  R package for Flexible dot plots
  ☆29Updated 3 years ago
• ggjlab / scHCL
  ☆47Updated 5 years ago
• BMILAB / scAPAtrap
  ☆25Updated 3 months ago
• wenweixiong / MARVEL
  ☆53Updated last year
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆45Updated 4 months ago
• shenorrLabTRDF / bseqsc
  Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline
  ☆46Updated 2 years ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆45Updated 3 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆60Updated 2 years ago