AI4SCR / ATHENALinks
☆33Updated 4 months ago
Alternatives and similar repositories for ATHENA
Users that are interested in ATHENA are comparing it to the libraries listed below
Sorting:
- ☆35Updated last year
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆51Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆34Updated 2 months ago
- ☆48Updated last week
- Reproducing the experiments of the DestVI paper☆18Updated 3 years ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆47Updated 3 years ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆47Updated last week
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆58Updated 6 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated 8 months ago
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- SPROD: Spatial expression profiling de-noising☆36Updated last year
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆42Updated 3 years ago
- ☆52Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆80Updated last year
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆117Updated 9 months ago
- ☆53Updated last week
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆35Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆20Updated this week
- ☆25Updated 5 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆26Updated 5 years ago
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- R based workflow for multiplexed imaging data☆32Updated last year
- Spatial Single-Cell Analysis Toolkit☆91Updated last week
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆24Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 11 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated last month