Join subcellular Visium HD bins into cells
☆143May 8, 2026Updated 3 months ago
Alternatives and similar repositories for bin2cell
Users that are interested in bin2cell are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repository for ENACT pipeline for end-to-end analysis of Visium HD data☆82Feb 10, 2026Updated 5 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆118Jun 9, 2025Updated last year
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆290Jul 15, 2026Updated 3 weeks ago
- Probabilistic cell segmentation for in situ spatial transcriptomics☆182Updated this week
- BANKSY: spatial clustering☆158May 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆474Jan 22, 2026Updated 6 months ago
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆87Jul 4, 2026Updated last month
- A tool for semi-automatic cell type classification☆500May 22, 2026Updated 2 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- A tool for semi-automatic cell type harmonization and integration☆121Mar 9, 2026Updated 5 months ago
- An open and interoperable data framework for spatial omics data☆383Updated this week
- cell type specific, trait-associated gene regulation☆30Updated this week
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 6 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)☆455Jul 13, 2026Updated 3 weeks ago
- Static plotting for spatialdata☆82Updated this week
- Learning cell communication from spatial graphs of cells☆120Jan 15, 2024Updated 2 years ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.